Variant report

Variant	rs11810000
Chromosome Location	chr1:210724939-210724940
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11804799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686939	1.00[AMR][1000 genomes]
rs7536126	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7553343	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv549106	chr1:210698719-210736508	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011702	chr1:210706323-210739030	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1003105	chr1:210717288-210739030	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1014480	chr1:210717288-210743026	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3321106	chr1:210720529-210726827	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3321110	chr1:210722118-210725112	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv819787	chr1:210722199-210725068	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv6795	chr1:210722243-210725141	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv435854	chr1:210722255-210727263	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv4955	chr1:210722259-210725008	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
12	esv3321112	chr1:210722350-210724982	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3321108	chr1:210722381-210724954	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv820875	chr1:210722403-210725138	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv826531	chr1:210722403-210725138	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
16	esv13554	chr1:210722474-210724965	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv549116	chr1:210722554-210725328	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv549117	chr1:210722554-210727515	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv549120	chr1:210722677-210725328	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210680600-210731000	Weak transcription	HSMM	muscle
2	chr1:210715600-210730800	Weak transcription	HSMMtube	muscle
3	chr1:210722000-210731800	Weak transcription	Right Ventricle	heart
4	chr1:210724400-210725400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:210724600-210729800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:210724800-210725600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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