Variant report

Variant	rs11810436
Chromosome Location	chr1:213374670-213374671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11811152	1.00[AFR][1000 genomes]
rs11811908	0.91[AFR][1000 genomes]
rs17020299	0.91[AFR][1000 genomes]
rs17020350	0.91[AFR][1000 genomes]
rs17020376	0.82[AFR][1000 genomes]
rs2132429	0.82[AFR][1000 genomes]
rs7417589	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv1794228	chr1:213355519-213379480	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012014	chr1:213371127-213423214	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213301000-213374800	Weak transcription	HSMM	muscle
2	chr1:213326600-213422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:213328200-213387200	Weak transcription	Spleen	Spleen
4	chr1:213340600-213424600	Weak transcription	Pancreas	Pancrea
5	chr1:213345600-213404600	Weak transcription	Osteobl	bone
6	chr1:213346200-213387400	Weak transcription	Gastric	stomach
7	chr1:213350400-213383200	Weak transcription	Placenta	Placenta
8	chr1:213357800-213387200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:213358000-213375000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:213360400-213405200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:213360600-213378000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:213361600-213386600	Weak transcription	Aorta	Aorta
13	chr1:213362200-213415400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:213368200-213378200	Weak transcription	K562	blood
15	chr1:213368200-213386600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:213368200-213387200	Weak transcription	Lung	lung
17	chr1:213369600-213388800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:213369800-213398200	Weak transcription	Fetal Heart	heart
19	chr1:213370600-213380200	Weak transcription	Fetal Stomach	stomach
20	chr1:213370800-213380600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:213370800-213427600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:213371000-213389400	Weak transcription	Right Ventricle	heart
23	chr1:213371600-213385000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:213371600-213385400	Weak transcription	NHDF-Ad	bronchial
25	chr1:213371800-213378000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:213371800-213386000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:213371800-213387200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:213371800-213388800	Weak transcription	HepG2	liver
29	chr1:213371800-213390000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:213372000-213389800	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:213372000-213393200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:213372000-213405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:213372600-213377400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:213372600-213390200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:213372600-213413800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:213372800-213377800	Weak transcription	Fetal Kidney	kidney
37	chr1:213372800-213387200	Weak transcription	Liver	Liver
38	chr1:213372800-213414000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:213373000-213374800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:213373000-213377200	Weak transcription	Ovary	ovary
41	chr1:213373000-213377400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr1:213373000-213378200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:213373000-213378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:213373000-213385200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:213373000-213386000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:213373000-213398000	Weak transcription	Colon Smooth Muscle	Colon
47	chr1:213373000-213405200	Weak transcription	Left Ventricle	heart
48	chr1:213373000-213414200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:213373000-213423000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr1:213373200-213377200	Weak transcription	Monocytes-CD14+_RO01746	blood

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