Variant report

Variant	rs11811019
Chromosome Location	chr1:209492687-209492688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11799563	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11810066	1.00[AFR][1000 genomes]
rs11811431	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209491400-209492800	Enhancers	HSMMtube	muscle
2	chr1:209491400-209493200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209491400-209493400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:209491600-209493400	Enhancers	HMEC	breast
5	chr1:209491800-209493200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:209491800-209493200	Enhancers	HSMM	muscle
7	chr1:209491800-209493400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:209492000-209492800	Flanking Active TSS	Hela-S3	cervix
9	chr1:209492000-209493000	Enhancers	NH-A	brain
10	chr1:209492400-209492800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:209492400-209492800	Weak transcription	Fetal Brain Male	brain
12	chr1:209492400-209493000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:209492400-209493200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:209492400-209493800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:209492600-209492800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:209492600-209493400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:209492600-209493400	Enhancers	NHEK	skin
18	chr1:209492600-209493400	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links