Variant report

Variant	rs11811358
Chromosome Location	chr1:227475157-227475158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:227465837..227468311-chr1:227473296..227476222,2	K562	blood:
2	chr1:227468539..227470129-chr1:227473158..227475443,2	K562	blood:
3	chr1:227474282..227476737-chr1:227504672..227506541,2	K562	blood:

Variant related genes	Relation type
ENSG00000143776	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1015815	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1015816	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10916109	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10916114	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11801994	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11803590	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11803761	0.91[EUR][1000 genomes]
rs11805298	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11806511	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11806820	0.83[AMR][1000 genomes]
rs11806937	0.91[EUR][1000 genomes]
rs11808928	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11809998	0.83[AMR][1000 genomes]
rs11810328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12402456	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12403391	0.83[AMR][1000 genomes]
rs12403650	0.93[EUR][1000 genomes]
rs12403986	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12404494	0.83[AMR][1000 genomes]
rs12405122	0.83[AMR][1000 genomes]
rs12405363	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12405878	0.83[AMR][1000 genomes]
rs12408437	0.83[AMR][1000 genomes]
rs12408913	0.93[EUR][1000 genomes]
rs12409816	0.81[AMR][1000 genomes]
rs12410327	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12741049	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1464076	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1464077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1513600	0.83[AMR][1000 genomes]
rs1513602	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1513603	0.91[EUR][1000 genomes]
rs1546557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1606549	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16847098	0.83[AMR][1000 genomes]
rs16847492	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16847634	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17613166	0.93[EUR][1000 genomes]
rs2090009	0.83[AMR][1000 genomes]
rs34263105	0.96[EUR][1000 genomes]
rs34400564	0.91[EUR][1000 genomes]
rs41270149	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4255349	0.95[EUR][1000 genomes]
rs4282782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4300186	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4354510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4434814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4437846	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4518864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4543764	0.89[EUR][1000 genomes]
rs55805110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55882852	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55946024	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56834719	0.83[AMR][1000 genomes]
rs57276421	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57513303	0.83[AMR][1000 genomes]
rs57758974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58489467	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59116340	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59121440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59859849	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60068245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60079575	0.81[AMR][1000 genomes]
rs60235610	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60291100	0.83[AMR][1000 genomes]
rs60641481	0.83[AMR][1000 genomes]
rs60742095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60958272	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61081394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61522132	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6659506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6668367	0.94[EUR][1000 genomes]
rs6675383	0.83[AMR][1000 genomes]
rs73088658	0.91[EUR][1000 genomes]
rs73090612	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73094351	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73094393	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73094400	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73096317	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73096350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73096353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73096358	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73096374	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73098390	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73098398	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73099023	0.83[AMR][1000 genomes]
rs73099026	0.83[AMR][1000 genomes]
rs73100804	0.83[AMR][1000 genomes]
rs73100814	0.83[AMR][1000 genomes]
rs73100852	0.80[AMR][1000 genomes]
rs73102307	0.92[EUR][1000 genomes]
rs73102915	0.83[AMR][1000 genomes]
rs73102920	0.83[AMR][1000 genomes]
rs73102930	0.83[AMR][1000 genomes]
rs73102936	0.83[AMR][1000 genomes]
rs74140153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7515739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7519099	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7526283	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7534286	0.88[EUR][1000 genomes]
rs7535010	0.88[EUR][1000 genomes]
rs7539037	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7539750	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7542505	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7544923	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7545775	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7551556	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv873242	chr1:227371906-227579344	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv549271	chr1:227411003-227581017	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3453491	chr1:227462942-227482283	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3453492	chr1:227462956-227482280	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227431600-227486200	Weak transcription	NHDF-Ad	bronchial
2	chr1:227462600-227500200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:227467200-227485800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:227469200-227477600	Weak transcription	Psoas Muscle	Psoas
5	chr1:227469200-227500200	Weak transcription	Left Ventricle	heart
6	chr1:227469200-227502600	Weak transcription	HSMM	muscle
7	chr1:227469400-227477000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:227469600-227501800	Weak transcription	Fetal Stomach	stomach
9	chr1:227470600-227483000	Weak transcription	Stomach Mucosa	stomach
10	chr1:227470600-227485800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:227472200-227476400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:227472400-227476200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr1:227472600-227475800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr1:227472800-227475800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr1:227472800-227476000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:227473800-227486200	Weak transcription	Aorta	Aorta
17	chr1:227474000-227478200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:227474200-227486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:227474400-227475600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:227474600-227475200	Strong transcription	K562	blood
21	chr1:227474600-227486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:227474800-227475800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:227474800-227485800	Weak transcription	HUVEC	blood vessel
24	chr1:227474800-227486200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:227474800-227486200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr1:227475000-227477000	Weak transcription	Brain Germinal Matrix	brain
27	chr1:227475000-227484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:227475000-227486200	Weak transcription	HMEC	breast
29	chr1:227475000-227491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:227475000-227502000	Weak transcription	Primary hematopoietic stem cells	blood

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