Variant report

Variant	rs11812145
Chromosome Location	chr10:5983005-5983006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5977584..5980772-chr10:5981177..5984329,3	MCF-7	breast:
2	chr10:5982635..5984170-chr10:5986704..5988316,2	K562	blood:
3	chr10:5973930..5977726-chr10:5979603..5983323,6	K562	blood:
4	chr10:5976188..5979309-chr10:5979959..5984368,9	K562	blood:
5	chr10:5982039..5983833-chr10:5987126..5991041,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134452	Chromatin interaction
ENSG00000232807	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8177659	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5952000-5985000	Weak transcription	Stomach Mucosa	stomach
2	chr10:5966200-5983600	Weak transcription	Right Atrium	heart
3	chr10:5969600-5987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:5971800-5983400	Weak transcription	Psoas Muscle	Psoas
7	chr10:5972800-5986800	Weak transcription	Hela-S3	cervix
8	chr10:5973400-5985600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:5977600-5986800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:5978000-5985400	Weak transcription	Fetal Heart	heart
11	chr10:5978600-5985400	Weak transcription	Fetal Kidney	kidney
12	chr10:5978800-5988200	Weak transcription	Fetal Brain Male	brain
13	chr10:5979000-5983600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:5979200-5986800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:5979400-5985400	Weak transcription	Small Intestine	intestine
16	chr10:5980000-5991000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:5980200-5985400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:5980200-5987200	Weak transcription	Primary B cells from cord blood	blood
20	chr10:5980200-5987800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:5980400-5983800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:5980400-5984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:5980400-5985400	Weak transcription	NHDF-Ad	bronchial
24	chr10:5980400-5987800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:5980600-5983600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:5980600-5983800	Weak transcription	Right Ventricle	heart
27	chr10:5980600-5983800	Weak transcription	HUVEC	blood vessel
28	chr10:5980600-5984000	Weak transcription	Ovary	ovary
29	chr10:5980600-5984400	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:5980600-5985600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:5980600-5985800	Weak transcription	Aorta	Aorta
32	chr10:5980600-5987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:5980600-5987400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:5980800-5983400	Weak transcription	Spleen	Spleen
35	chr10:5980800-5983800	Weak transcription	HMEC	breast
36	chr10:5980800-5984400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:5980800-5985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:5980800-5985400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:5980800-5985400	Weak transcription	Colonic Mucosa	Colon
40	chr10:5980800-5985400	Weak transcription	Fetal Lung	lung
41	chr10:5980800-5985400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:5980800-5985400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:5980800-5985400	Weak transcription	HSMM	muscle
44	chr10:5980800-5985400	Weak transcription	HSMMtube	muscle
45	chr10:5980800-5985600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:5980800-5986400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:5980800-5986600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:5980800-5987400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:5980800-5987400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:5980800-5987400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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