Variant report

Variant	rs11812196
Chromosome Location	chr10:52566603-52566604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11812413	1.00[AMR][1000 genomes]
rs11812958	1.00[AMR][1000 genomes]
rs11813457	1.00[AMR][1000 genomes]
rs11816013	1.00[AMR][1000 genomes]
rs11816953	1.00[AMR][1000 genomes]
rs11817206	1.00[AMR][1000 genomes]
rs7898659	1.00[AMR][1000 genomes]
rs7908477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52555200-52575800	Weak transcription	Pancreas	Pancrea
2	chr10:52563800-52569400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52564600-52567200	Strong transcription	Fetal Intestine Large	intestine
4	chr10:52564800-52567600	Strong transcription	HepG2	liver
5	chr10:52565200-52567200	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr10:52565400-52567800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:52565600-52567800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:52565800-52567000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:52565800-52567400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr10:52565800-52567400	Strong transcription	Fetal Intestine Small	intestine
11	chr10:52565800-52575400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
13	chr10:52566000-52567400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:52566000-52567400	Genic enhancers	Liver	Liver
15	chr10:52566200-52567200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:52566200-52567200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:52566200-52567200	Weak transcription	NHDF-Ad	bronchial
18	chr10:52566200-52567600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:52566200-52567600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:52566200-52568200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:52566400-52567600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:52566600-52567800	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links