Variant report

Variant	rs11812556
Chromosome Location	chr10:21961687-21961688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21956427..21959026-chr10:21960604..21963223,2	K562	blood:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1243190	1.00[YRI][hapmap]
rs950567	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21896800-21973200	Weak transcription	Hela-S3	cervix
2	chr10:21908400-21964000	Weak transcription	Colonic Mucosa	Colon
3	chr10:21915200-21983800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:21915400-21967000	Weak transcription	Pancreas	Pancrea
5	chr10:21917200-21967400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:21920000-21965600	Weak transcription	Esophagus	oesophagus
7	chr10:21923800-21983200	Weak transcription	NHLF	lung
8	chr10:21924200-21962400	Weak transcription	HSMM	muscle
9	chr10:21928600-21988200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:21928800-21962400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:21928800-21970200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:21928800-21974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:21929800-21988000	Weak transcription	HUVEC	blood vessel
14	chr10:21938600-21975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:21938600-21993800	Weak transcription	Lung	lung
16	chr10:21938800-21962400	Weak transcription	Aorta	Aorta
17	chr10:21938800-21964400	Weak transcription	Spleen	Spleen
18	chr10:21938800-21969600	Weak transcription	NHEK	skin
19	chr10:21942200-21962200	Weak transcription	Liver	Liver
20	chr10:21942400-21961800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:21942400-21962400	Weak transcription	NHDF-Ad	bronchial
22	chr10:21942400-21962400	Weak transcription	Osteobl	bone
23	chr10:21942400-21970000	Weak transcription	HMEC	breast
24	chr10:21942400-21976200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:21942400-21977400	Weak transcription	Adipose Nuclei	Adipose
26	chr10:21942400-21987200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:21942600-21962200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:21942600-21962400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:21942600-22004000	Weak transcription	NH-A	brain
30	chr10:21942800-21962400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:21942800-21988400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:21943000-21962400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:21943000-21969800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:21943200-21961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:21943200-21961800	Weak transcription	Fetal Thymus	thymus
36	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:21945000-21965000	Weak transcription	Gastric	stomach
38	chr10:21945200-21962200	Weak transcription	Primary B cells from cord blood	blood
39	chr10:21945200-21976400	Weak transcription	Right Ventricle	heart
40	chr10:21948600-21962400	Weak transcription	Left Ventricle	heart
41	chr10:21951200-21962400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:21951200-21989000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:21951600-21963200	Weak transcription	Brain Anterior Caudate	brain
44	chr10:21951800-21962200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:21951800-21962400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:21951800-21966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:21951800-21976800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:21951800-21978000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:21951800-21989200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:21952000-21975400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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