Variant report

Variant	rs11812622
Chromosome Location	chr10:90733703-90733704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90732274..90733956-chr10:90744737..90747226,2	K562	blood:
2	chr10:90731580..90734005-chr10:90736763..90739538,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12412106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447091	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61852571	0.83[AMR][1000 genomes]
rs72809340	1.00[AFR][1000 genomes]
rs730755	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90713600-90733800	Weak transcription	HSMM	muscle
2	chr10:90723000-90734400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:90723400-90733800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:90724600-90734400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:90724800-90734000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:90724800-90739000	Weak transcription	Small Intestine	intestine
7	chr10:90725000-90734400	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:90725000-90734400	Weak transcription	Hela-S3	cervix
9	chr10:90729200-90734200	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:90730000-90734600	Enhancers	Colon Smooth Muscle	Colon
11	chr10:90730800-90734200	Enhancers	NHDF-Ad	bronchial
12	chr10:90731000-90734000	Enhancers	Liver	Liver
13	chr10:90731000-90734400	Enhancers	NHLF	lung
14	chr10:90731600-90733800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:90731800-90734400	Weak transcription	Adipose Nuclei	Adipose
16	chr10:90731800-90734600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:90731800-90734800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:90732000-90734000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:90732000-90734400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:90732000-90734600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:90732200-90733800	Weak transcription	Fetal Stomach	stomach
22	chr10:90732200-90734000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:90732200-90734600	Weak transcription	Fetal Lung	lung
24	chr10:90732400-90734600	Weak transcription	Thymus	Thymus
25	chr10:90733000-90733800	Enhancers	Aorta	Aorta
26	chr10:90733000-90734400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:90733200-90733800	Enhancers	Ovary	ovary
28	chr10:90733200-90734000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:90733200-90734400	Enhancers	Osteobl	bone
30	chr10:90733600-90734000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:90733600-90734400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:90733600-90734400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:90733600-90734400	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr10:90733600-90734600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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