Variant report

Variant	rs11812674
Chromosome Location	chr10:93959172-93959173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93958713..93960977-chr10:93966306..93968107,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11817048	0.81[AFR][1000 genomes]
rs9663787	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
4	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93927000-93966200	Weak transcription	Ovary	ovary
6	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
13	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:93940600-93970800	Weak transcription	Fetal Stomach	stomach
18	chr10:93941800-93968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr10:93945800-93963800	Weak transcription	Fetal Brain Female	brain
21	chr10:93946600-93964000	Weak transcription	Left Ventricle	heart
22	chr10:93947800-93967800	Weak transcription	GM12878-XiMat	blood
23	chr10:93949000-93961800	Weak transcription	Primary T cells from cord blood	blood
24	chr10:93952400-93963400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:93952600-93966200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:93956200-93967000	Weak transcription	Fetal Heart	heart
27	chr10:93957200-93960400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:93958200-93968400	Weak transcription	Right Atrium	heart
29	chr10:93958400-93963800	Weak transcription	Right Ventricle	heart
30	chr10:93958400-93967600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:93958400-93981000	Weak transcription	Psoas Muscle	Psoas
32	chr10:93958600-93960400	Weak transcription	Hela-S3	cervix
33	chr10:93958600-93961200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:93958800-93960400	Weak transcription	K562	blood
35	chr10:93958800-93962800	Weak transcription	Aorta	Aorta
36	chr10:93958800-93967000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:93958800-93967000	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:93959000-93969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:93959000-93985800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links