Variant report

Variant	rs11813351
Chromosome Location	chr10:99393208-99393209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99392777..99394895-chr10:99398430..99402860,4	K562	blood:
2	chr10:99390939..99393412-chr10:99398655..99401126,3	MCF-7	breast:
3	chr10:99391497..99393437-chr10:99445445..99447604,2	MCF-7	breast:
4	chr10:99332396..99334042-chr10:99392626..99394470,2	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000155252	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11812264	0.91[AFR][1000 genomes]
rs11816869	0.90[AFR][1000 genomes]
rs60640003	0.91[AFR][1000 genomes]
rs7083893	0.90[AFR][1000 genomes]
rs7895793	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99388200-99393400	Weak transcription	Fetal Heart	heart
2	chr10:99392200-99393400	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:99392200-99393400	Active TSS	HMEC	breast
4	chr10:99392200-99393600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:99392200-99393600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:99392200-99393800	Active TSS	H1 Cell Line	embryonic stem cell
7	chr10:99392200-99393800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:99392200-99393800	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:99392400-99393400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr10:99392400-99393400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:99392400-99393400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99392400-99393400	Active TSS	HSMMtube	muscle
13	chr10:99392400-99393400	Active TSS	Osteobl	bone
14	chr10:99392400-99393600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:99392400-99393600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:99392400-99393600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr10:99392400-99393600	Active TSS	Pancreas	Pancrea
18	chr10:99392400-99393600	Active TSS	GM12878-XiMat	blood
19	chr10:99392400-99393600	Active TSS	HSMM	muscle
20	chr10:99392400-99393600	Active TSS	NH-A	brain
21	chr10:99392400-99393600	Active TSS	NHDF-Ad	bronchial
22	chr10:99392400-99393800	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr10:99392400-99393800	Active TSS	H9 Cell Line	embryonic stem cell
24	chr10:99392400-99393800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:99392400-99393800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:99392400-99393800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr10:99392400-99393800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:99392400-99393800	Active TSS	Colon Smooth Muscle	Colon
29	chr10:99392400-99393800	Active TSS	Fetal Brain Male	brain
30	chr10:99392400-99393800	Active TSS	Fetal Intestine Large	intestine
31	chr10:99392400-99393800	Active TSS	Fetal Kidney	kidney
32	chr10:99392400-99393800	Active TSS	Left Ventricle	heart
33	chr10:99392400-99393800	Active TSS	Ovary	ovary
34	chr10:99392400-99393800	Active TSS	K562	blood
35	chr10:99392400-99394000	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr10:99392400-99394000	Active TSS	Muscle Satellite Cultured Cells	--
37	chr10:99392400-99394000	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr10:99392400-99394000	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr10:99392400-99394000	Active TSS	Rectal Smooth Muscle	rectum
40	chr10:99392600-99393400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:99392600-99393400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:99392600-99393400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:99392600-99393400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:99392600-99393400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:99392600-99393400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr10:99392600-99393600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:99392600-99393600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:99392600-99393600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:99392600-99393600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr10:99392600-99393600	Active TSS	Aorta	Aorta

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