Variant report

Variant	rs11813524
Chromosome Location	chr10:5882680-5882681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5853267..5855548-chr10:5881785..5884894,3	MCF-7	breast:
2	chr10:5857495..5859789-chr10:5881654..5883847,2	K562	blood:
3	chr10:5852473..5857853-chr10:5880942..5888645,8	MCF-7	breast:
4	chr10:5875866..5877647-chr10:5881023..5883616,2	K562	blood:
5	chr10:5876253..5877969-chr10:5881683..5883648,2	K562	blood:
6	chr10:5851570..5858995-chr10:5881654..5887342,9	K562	blood:
7	chr10:5850869..5856128-chr10:5879241..5885807,8	K562	blood:

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12722698	1.00[MEX][hapmap]
rs2380204	0.90[YRI][hapmap]
rs3891620	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv982902	chr10:5872818-5889953	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3342274	chr10:5875995-5901345	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1794948	chr10:5880066-5892545	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1795821	chr10:5880066-5893268	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1801910	chr10:5881740-5898882	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5875000-5886600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:5878000-5885600	Weak transcription	K562	blood
3	chr10:5881600-5882800	Enhancers	NHDF-Ad	bronchial
4	chr10:5881600-5883000	Enhancers	Placenta	Placenta
5	chr10:5881600-5883200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:5882000-5882800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:5882000-5883000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr10:5882000-5883400	Flanking Active TSS	HepG2	liver
9	chr10:5882200-5882800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:5882200-5882800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:5882200-5882800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:5882200-5882800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr10:5882200-5882800	Flanking Active TSS	Brain Angular Gyrus	brain
14	chr10:5882200-5882800	Active TSS	Brain Hippocampus Middle	brain
15	chr10:5882200-5882800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr10:5882200-5882800	Active TSS	Osteobl	bone
17	chr10:5882200-5883000	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:5882200-5883000	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr10:5882200-5883000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:5882200-5883000	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr10:5882200-5883000	Enhancers	Fetal Thymus	thymus
22	chr10:5882200-5883200	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr10:5882200-5883200	Flanking Active TSS	GM12878-XiMat	blood
24	chr10:5882200-5883800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:5882200-5886800	Weak transcription	NHLF	lung
26	chr10:5882400-5882800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:5882400-5882800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:5882400-5882800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:5882400-5882800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:5882400-5882800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:5882400-5882800	Enhancers	Fetal Kidney	kidney
32	chr10:5882400-5882800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:5882400-5882800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
34	chr10:5882400-5883000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:5882400-5883000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr10:5882400-5883000	Enhancers	Fetal Lung	lung
37	chr10:5882400-5883000	Enhancers	Right Ventricle	heart
38	chr10:5882400-5883000	Enhancers	Spleen	Spleen
39	chr10:5882400-5883200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:5882400-5883200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:5882400-5883200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:5882400-5883400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:5882400-5883400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:5882400-5883400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr10:5882400-5883400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr10:5882400-5883400	Enhancers	Fetal Heart	heart
47	chr10:5882600-5882800	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr10:5882600-5882800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr10:5882600-5882800	Enhancers	Right Atrium	heart
50	chr10:5882600-5882800	Bivalent Enhancer	HMEC	breast

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