Variant report

Variant	rs11813851
Chromosome Location	chr10:20136749-20136750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18949169..18950743-chr10:20135931..20138598,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61499579	1.00[EUR][1000 genomes]
rs74119738	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1044794	chr10:20010269-20391329	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540510	chr10:20010269-20391329	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1038966	chr10:20010469-20391190	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv540511	chr10:20010469-20391190	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1037055	chr10:20010469-20651965	Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv540512	chr10:20010469-20651965	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:20110400-20151400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:20115200-20154000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:20122800-20149000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:20126200-20142600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:20128400-20145200	Weak transcription	Small Intestine	intestine
6	chr10:20130000-20142600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:20131600-20138800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:20132000-20161200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:20133000-20138000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:20133000-20143000	Weak transcription	Aorta	Aorta
11	chr10:20133400-20151600	Weak transcription	Fetal Stomach	stomach
12	chr10:20134200-20142600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:20134200-20142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:20134200-20143000	Weak transcription	Left Ventricle	heart
15	chr10:20134400-20137400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:20134600-20152000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:20134600-20168400	Weak transcription	Ovary	ovary
18	chr10:20134800-20136800	Enhancers	NHEK	skin
19	chr10:20134800-20137800	Enhancers	HMEC	breast
20	chr10:20134800-20142800	Weak transcription	Right Atrium	heart
21	chr10:20134800-20151400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:20134800-20152200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:20134800-20155200	Weak transcription	Fetal Kidney	kidney
24	chr10:20135000-20140600	Weak transcription	Lung	lung
25	chr10:20135000-20147600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:20135000-20149000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:20135000-20151600	Weak transcription	Psoas Muscle	Psoas
28	chr10:20135000-20154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:20135600-20136800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:20135600-20137200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr10:20135600-20137200	Strong transcription	Fetal Lung	lung
32	chr10:20135600-20137400	Enhancers	Osteobl	bone
33	chr10:20135800-20137000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:20135800-20137000	Enhancers	Placenta	Placenta
35	chr10:20135800-20137800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:20135800-20147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:20136000-20137000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:20136000-20137600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:20136000-20137600	Enhancers	Brain Hippocampus Middle	brain
40	chr10:20136200-20137600	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:20136200-20137800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:20136200-20137800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr10:20136200-20137800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr10:20136200-20138200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:20136400-20137800	Enhancers	Brain Anterior Caudate	brain
46	chr10:20136400-20137800	Enhancers	Brain Substantia Nigra	brain
47	chr10:20136400-20141000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:20136400-20142800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:20136400-20147200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:20136400-20151600	Weak transcription	Brain Cingulate Gyrus	brain

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