Variant report

Variant	rs11816865
Chromosome Location	chr10:90014680-90014681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89994341..89996792-chr10:90014241..90017227,2	MCF-7	breast:
2	chr10:89620229..89621991-chr10:90012840..90014857,2	MCF-7	breast:
3	chr10:90008495..90010104-chr10:90013625..90015215,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1426614	0.86[EUR][1000 genomes]
rs670472	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs955033	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11816865	LIPJ	cis	cerebellum	SCAN
rs11816865	IFIT1B	cis	cerebellum	SCAN
rs11816865	PCGF5	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
4	chr10:90012400-90015200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:90013200-90015000	Enhancers	HMEC	breast
9	chr10:90013200-90015200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:90013200-90015800	Enhancers	NHLF	lung
11	chr10:90013400-90014800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:90013400-90015600	Enhancers	Stomach Mucosa	stomach
13	chr10:90013400-90015800	Enhancers	Pancreas	Pancrea
14	chr10:90013600-90014800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:90013600-90014800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:90013800-90014800	Weak transcription	Esophagus	oesophagus
17	chr10:90014000-90015600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:90014200-90015200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:90014400-90014800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:90014400-90015000	Enhancers	Hela-S3	cervix
23	chr10:90014400-90015400	Enhancers	A549	lung
24	chr10:90014400-90015600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:90014400-90015600	Weak transcription	HSMM	muscle
26	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
27	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
28	chr10:90014600-90014800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:90014600-90015000	Weak transcription	NHDF-Ad	bronchial
30	chr10:90014600-90019800	Weak transcription	Dnd41	blood
31	chr10:90014600-90025600	Weak transcription	Osteobl	bone

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