Variant report

Variant	rs11817193
Chromosome Location	chr10:99260610-99260611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99260312..99262162-chr10:99268018..99269969,2	MCF-7	breast:
2	chr10:99254835..99256478-chr10:99258857..99262357,3	MCF-7	breast:
3	chr10:99259143..99261299-chr10:99264874..99266683,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59111823	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99259600-99261000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr10:99259600-99261000	Enhancers	Spleen	Spleen
3	chr10:99259800-99260800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:99259800-99260800	Flanking Active TSS	HUVEC	blood vessel
5	chr10:99260000-99260800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:99260000-99261400	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:99260000-99261600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:99260200-99260800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:99260200-99260800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:99260200-99260800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:99260200-99260800	Enhancers	Fetal Lung	lung
12	chr10:99260200-99260800	Enhancers	Left Ventricle	heart
13	chr10:99260200-99260800	Enhancers	Right Ventricle	heart
14	chr10:99260200-99261000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:99260200-99261000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:99260200-99261000	Enhancers	Psoas Muscle	Psoas
17	chr10:99260200-99261000	Enhancers	NHEK	skin
18	chr10:99260200-99262000	Weak transcription	Right Atrium	heart
19	chr10:99260200-99262000	Enhancers	HepG2	liver
20	chr10:99260200-99262800	Weak transcription	Lung	lung
21	chr10:99260200-99263200	Weak transcription	Aorta	Aorta
22	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
23	chr10:99260400-99260800	Bivalent Enhancer	Primary B cells from cord blood	blood
24	chr10:99260400-99260800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
25	chr10:99260400-99260800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:99260400-99260800	Enhancers	Adipose Nuclei	Adipose
27	chr10:99260400-99260800	Enhancers	Brain Hippocampus Middle	brain
28	chr10:99260400-99260800	Enhancers	Brain Substantia Nigra	brain
29	chr10:99260400-99260800	Enhancers	HMEC	breast
30	chr10:99260400-99261000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:99260400-99261000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr10:99260400-99261400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:99260400-99262000	Weak transcription	HSMMtube	muscle
34	chr10:99260400-99262800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:99260400-99263000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:99260400-99264800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:99260400-99269400	Weak transcription	Ovary	ovary
38	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:99260600-99260800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:99260600-99260800	Enhancers	HSMM	muscle
42	chr10:99260600-99260800	Weak transcription	NHLF	lung
43	chr10:99260600-99261600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr10:99260600-99263000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:99260600-99263000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:99260600-99263200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:99260600-99263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:99260600-99264600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:99260600-99267600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:99260600-99267800	Weak transcription	Osteobl	bone

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