Variant report

Variant	rs11818264
Chromosome Location	chr10:98346392-98346393
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98346089..98346610-chr6:75953092..75953659,2	NB4	blood:
2	chr10:98345983..98346533-chr11:65189850..65190379,2	Hela-S3	cervix:
3	chr10:98346273..98347080-chr13:111367287..111368137,2	Hela-S3	cervix:
4	chr10:98336275..98339517-chr10:98344498..98348223,6	MCF-7	breast:
5	chr10:98345600..98346536-chr5:43483382..43484086,2	Hela-S3	cervix:
6	chr10:98346272..98347070-chr19:10613208..10614006,2	NB4	blood:
7	chr10:98346001..98346671-chr11:10830156..10831102,2	Hela-S3	cervix:
8	chr10:98346358..98347264-chr12:31478554..31479072,2	Hela-S3	cervix:
9	chr10:98346336..98346846-chr19:33667684..33668254,2	Hela-S3	cervix:
10	chr1:43855378..43855887-chr10:98346254..98347186,2	Hela-S3	cervix:
11	chr10:98345733..98347828-chr10:98591279..98593531,2	MCF-7	breast:
12	chr10:98346013..98346591-chr3:43327414..43328126,2	Hela-S3	cervix:
13	chr1:25573131..25573708-chr10:98346304..98347301,2	Hela-S3	cervix:
14	chr10:98346265..98346836-chr17:45972611..45973150,2	Hela-S3	cervix:
15	chr10:98344586..98349024-chr10:98390080..98394763,4	MCF-7	breast:
16	chr10:98345353..98347090-chr10:98380383..98383295,2	K562	blood:
17	chr1:17230932..17231863-chr10:98345915..98346602,2	Hela-S3	cervix:
18	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:
19	chr1:28908124..28908849-chr10:98346320..98346849,2	Hela-S3	cervix:
20	chr1:109203195..109203852-chr10:98346013..98346805,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000245532	Chromatin interaction
ENSG00000155629	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000112695	Chromatin interaction
ENSG00000117616	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000264355	Chromatin interaction
ENSG00000159479	Chromatin interaction
ENSG00000198198	Chromatin interaction
ENSG00000163788	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000197989	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000264920	Chromatin interaction
ENSG00000139146	Chromatin interaction
ENSG00000079999	Chromatin interaction
ENSG00000162639	Chromatin interaction
ENSG00000227032	Chromatin interaction
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11188826	0.92[EUR][1000 genomes]
rs12240642	0.82[EUR][1000 genomes]
rs58936355	1.00[EUR][1000 genomes]
rs6584084	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3358283	chr10:98345587-98348135	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
3	esv3446584	chr10:98345712-98347935	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98344400-98347200	Active TSS	HSMM	muscle
2	chr10:98344400-98347200	Active TSS	NHLF	lung
3	chr10:98344400-98347400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:98344400-98347600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:98344400-98347600	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr10:98344600-98347200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:98344600-98347400	Active TSS	Fetal Intestine Large	intestine
8	chr10:98344600-98347400	Active TSS	Fetal Intestine Small	intestine
9	chr10:98344600-98347600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:98344600-98347600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:98344600-98347800	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr10:98344600-98347800	Active TSS	Right Ventricle	heart
13	chr10:98344800-98347200	Active TSS	Fetal Thymus	thymus
14	chr10:98344800-98347200	Active TSS	HMEC	breast
15	chr10:98344800-98347200	Active TSS	HSMMtube	muscle
16	chr10:98344800-98347400	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr10:98344800-98347600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:98344800-98347600	Active TSS	NHDF-Ad	bronchial
19	chr10:98344800-98348000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:98345000-98347200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr10:98345000-98347400	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:98345000-98347400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:98345000-98347400	Active TSS	GM12878-XiMat	blood
24	chr10:98345000-98347600	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr10:98345000-98347600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:98345000-98347600	Active TSS	A549	lung
27	chr10:98345000-98347800	Active TSS	Right Atrium	heart
28	chr10:98345000-98347800	Active TSS	Thymus	Thymus
29	chr10:98345200-98346600	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr10:98345200-98346600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:98345200-98346600	Bivalent/Poised TSS	HepG2	liver
32	chr10:98345200-98347000	Active TSS	Placenta	Placenta
33	chr10:98345200-98347200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:98345200-98347400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr10:98345200-98347600	Active TSS	H9 Cell Line	embryonic stem cell
36	chr10:98345200-98347600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:98345200-98347800	Active TSS	Ovary	ovary
38	chr10:98345200-98348000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:98345200-98348000	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr10:98345400-98347200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:98345400-98347200	Active TSS	Muscle Satellite Cultured Cells	--
42	chr10:98345400-98347400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:98345400-98347400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr10:98345400-98347400	Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr10:98345400-98347400	Active TSS	NHEK	skin
46	chr10:98345400-98347600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:98345400-98347600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:98345400-98347600	Active TSS	Left Ventricle	heart
49	chr10:98345400-98347600	Active TSS	Small Intestine	intestine
50	chr10:98345400-98347600	Active TSS	Stomach Mucosa	stomach

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