Variant report

Variant	rs11819797
Chromosome Location	chr11:62688286-62688287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62655359..62658338-chr11:62686047..62688444,2	K562	blood:
2	chr11:62622504..62624182-chr11:62686066..62688512,2	K562	blood:
3	chr11:62684211..62686815-chr11:62688182..62691339,3	K562	blood:
4	chr11:62686826..62688779-chr11:62689068..62691187,2	K562	blood:
5	chr11:62670875..62680186-chr11:62684644..62693105,18	MCF-7	breast:
6	chr11:62682515..62686496-chr11:62687145..62690547,5	K562	blood:
7	chr11:62606809..62611421-chr11:62687018..62693613,7	MCF-7	breast:
8	chr11:62676072..62679546-chr11:62682200..62691147,12	MCF-7	breast:
9	chr11:62683827..62686119-chr11:62686638..62688972,2	MCF-7	breast:
10	chr11:62605044..62611833-chr11:62683227..62691981,12	MCF-7	breast:
11	chr11:62687026..62689620-chr11:62751524..62753744,2	K562	blood:
12	chr11:62646710..62648810-chr11:62687538..62689071,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197901	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000257002	Chromatin interaction
ENSG00000168003	Chromatin interaction
ENSG00000168539	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11824018	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
4	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62684400-62689200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:62684400-62689400	Active TSS	Brain Cingulate Gyrus	brain
3	chr11:62685000-62688800	Active TSS	Brain Angular Gyrus	brain
4	chr11:62685000-62689200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:62685400-62689400	Active TSS	Brain Anterior Caudate	brain
6	chr11:62685600-62688400	Active TSS	Brain Hippocampus Middle	brain
7	chr11:62686600-62689600	Enhancers	Fetal Heart	heart
8	chr11:62687000-62689400	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr11:62687200-62689000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:62687200-62689400	Enhancers	Placenta	Placenta
11	chr11:62687400-62689400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:62687600-62688800	Flanking Active TSS	Fetal Brain Female	brain
13	chr11:62687600-62688800	Enhancers	Pancreas	Pancrea
14	chr11:62687600-62690600	Weak transcription	Right Atrium	heart
15	chr11:62687600-62691000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:62687800-62688400	Enhancers	Fetal Brain Male	brain
17	chr11:62687800-62688600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:62687800-62688600	Weak transcription	Gastric	stomach
19	chr11:62687800-62690800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:62688000-62688400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:62688000-62688600	Enhancers	Lung	lung
22	chr11:62688000-62688800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:62688200-62688400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:62688200-62688400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
25	chr11:62688200-62688600	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr11:62688200-62688800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:62688200-62690400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links