Variant report

Variant	rs11820492
Chromosome Location	chr11:5004092-5004093
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5002701..5004789-chr11:5011037..5012979,2	K562	blood:
2	chr11:4998734..5001673-chr11:5002692..5004874,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11821225	0.95[YRI][hapmap];0.85[AMR][1000 genomes]
rs11822444	0.83[AMR][1000 genomes]
rs11822916	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824506	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16907831	1.00[YRI][hapmap]
rs16907838	0.83[AMR][1000 genomes]
rs16907934	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55931850	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56048423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56121913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56156297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57216582	0.83[AMR][1000 genomes]
rs60536747	0.83[AMR][1000 genomes]
rs60547455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60708555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61013088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61102877	0.83[AMR][1000 genomes]
rs61587969	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61661806	0.83[AMR][1000 genomes]
rs74054414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054416	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054422	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054423	0.83[AMR][1000 genomes]
rs74054426	0.83[AMR][1000 genomes]
rs74054427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054430	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054435	0.83[AMR][1000 genomes]
rs7930600	0.83[AMR][1000 genomes]
rs7935991	0.83[AMR][1000 genomes]
rs7939181	0.83[AMR][1000 genomes]
rs7945219	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv1054610	chr11:4953844-5004203	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	nsv526998	chr11:4954607-5074301	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045154	chr11:4958462-5032685	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv540937	chr11:4958462-5032685	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
9	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
11	nsv1037991	chr11:4983908-5036608	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv540939	chr11:4983908-5036608	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1042452	chr11:5000771-5036608	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv540940	chr11:5000771-5036608	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5002600-5005400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:5004000-5005800	Enhancers	Fetal Lung	lung

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