Variant report

Variant	rs11820768
Chromosome Location	chr11:46727729-46727730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46715405..46717848-chr11:46725762..46728056,2	K562	blood:
2	chr11:46726766..46729006-chr11:46732378..46735055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175220	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12576204	1.00[MEX][hapmap]
rs3136494	1.00[MEX][hapmap]
rs35569076	1.00[MEX][hapmap]
rs4400757	1.00[MEX][hapmap]
rs7124331	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46723600-46728800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:46723600-46729600	Strong transcription	NHEK	skin
3	chr11:46723600-46730200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:46723600-46730200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:46723600-46732000	Weak transcription	Fetal Heart	heart
6	chr11:46723600-46739800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:46723800-46729200	Strong transcription	Placenta	Placenta
8	chr11:46723800-46729800	Strong transcription	Fetal Lung	lung
9	chr11:46723800-46733000	Strong transcription	Fetal Stomach	stomach
10	chr11:46724000-46727800	Strong transcription	HUVEC	blood vessel
11	chr11:46724000-46728400	Strong transcription	HMEC	breast
12	chr11:46724000-46728600	Strong transcription	NHDF-Ad	bronchial
13	chr11:46724000-46728800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:46724000-46728800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:46724000-46728800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr11:46724000-46729000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr11:46724000-46729000	Strong transcription	HSMMtube	muscle
18	chr11:46724000-46729000	Strong transcription	NH-A	brain
19	chr11:46724000-46729200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:46724000-46729200	Strong transcription	Thymus	Thymus
21	chr11:46724000-46729200	Strong transcription	K562	blood
22	chr11:46724000-46729400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:46724000-46729600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:46724000-46729600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:46724000-46730000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:46724000-46730200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:46724000-46730200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:46724000-46731000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:46724200-46727800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:46724200-46728800	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr11:46724200-46728800	Strong transcription	Left Ventricle	heart
32	chr11:46724200-46729200	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr11:46724200-46729600	Strong transcription	NHLF	lung
34	chr11:46724200-46730000	Strong transcription	Adipose Nuclei	Adipose
35	chr11:46724400-46727800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:46724400-46728400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:46724400-46728400	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr11:46724400-46729000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:46724400-46729200	Strong transcription	Fetal Intestine Large	intestine
40	chr11:46724400-46729400	Strong transcription	Esophagus	oesophagus
41	chr11:46724400-46729600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:46724400-46729600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:46724400-46729600	Strong transcription	Aorta	Aorta
44	chr11:46724400-46729600	Strong transcription	Brain Angular Gyrus	brain
45	chr11:46724400-46729600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr11:46724400-46729600	Strong transcription	Right Ventricle	heart
47	chr11:46724400-46729800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:46724400-46730000	Strong transcription	Fetal Brain Female	brain
49	chr11:46724400-46730200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr11:46724400-46730200	Strong transcription	Primary B cells from peripheral blood	blood

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