Variant report

Variant	rs11821271
Chromosome Location	chr11:24805361-24805362
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11820007	1.00[ASN][1000 genomes]
rs11822795	1.00[ASN][1000 genomes]
rs11822911	1.00[ASN][1000 genomes]
rs11827414	1.00[ASN][1000 genomes]
rs11827432	1.00[ASN][1000 genomes]
rs12280356	1.00[ASN][1000 genomes]
rs12280401	1.00[ASN][1000 genomes]
rs12287149	1.00[ASN][1000 genomes]
rs7934614	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1044583	chr11:24772936-24831557	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv897098	chr11:24778459-24814076	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv897099	chr11:24783183-24814076	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv34111	chr11:24802669-25090774	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24803000-24805600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:24804200-24805400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:24805200-24805400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:24805200-24805600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr11:24805200-24805600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:24805200-24805600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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