Variant report

Variant	rs11821345
Chromosome Location	chr11:108086255-108086256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108031402..108033727-chr11:108085284..108087418,2	K562	blood:
2	chr11:108084919..108087427-chr11:108093130..108095343,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction
ENSG00000149311	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11823514	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1442729	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4987926	0.88[AFR][1000 genomes]
rs4987929	0.88[AFR][1000 genomes]
rs4987956	0.88[AFR][1000 genomes]
rs4987968	0.83[AFR][1000 genomes]
rs7119429	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
4	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
6	chr11:108077800-108089200	Weak transcription	HMEC	breast
7	chr11:108078000-108090400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:108078000-108090600	Weak transcription	Fetal Heart	heart
9	chr11:108078200-108089000	Weak transcription	Osteobl	bone
10	chr11:108078200-108089400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:108078200-108089400	Weak transcription	NHDF-Ad	bronchial
12	chr11:108078400-108091800	Weak transcription	HSMMtube	muscle
13	chr11:108078600-108086600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:108078600-108089800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:108078600-108089800	Weak transcription	Pancreas	Pancrea
16	chr11:108078600-108090600	Weak transcription	Aorta	Aorta
17	chr11:108078600-108090800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:108078600-108090800	Weak transcription	Brain Substantia Nigra	brain
19	chr11:108078600-108091600	Weak transcription	Right Ventricle	heart
20	chr11:108078600-108091800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:108078600-108091800	Weak transcription	Lung	lung
22	chr11:108078600-108092200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:108078600-108092200	Weak transcription	Esophagus	oesophagus
24	chr11:108078800-108089800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:108078800-108091400	Weak transcription	Adipose Nuclei	Adipose
26	chr11:108078800-108092200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:108079000-108089200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:108079000-108089800	Weak transcription	Hela-S3	cervix
29	chr11:108079000-108090800	Weak transcription	Brain Anterior Caudate	brain
30	chr11:108079000-108091000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:108079200-108087600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:108079200-108087600	Weak transcription	NHEK	skin
33	chr11:108079200-108087800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:108079200-108087800	Weak transcription	Spleen	Spleen
35	chr11:108079200-108089400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:108079200-108089800	Weak transcription	Gastric	stomach
37	chr11:108079200-108090400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:108079200-108090600	Weak transcription	NHLF	lung
39	chr11:108079200-108091400	Weak transcription	NH-A	brain
40	chr11:108079200-108091800	Weak transcription	Brain Angular Gyrus	brain
41	chr11:108079200-108091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:108079600-108090000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:108079600-108091800	Weak transcription	Colonic Mucosa	Colon
44	chr11:108081200-108087200	Weak transcription	K562	blood
45	chr11:108081400-108087000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr11:108081400-108087600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:108081400-108089800	Weak transcription	Fetal Brain Male	brain
48	chr11:108081400-108091800	Weak transcription	HSMM	muscle
49	chr11:108081600-108091400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:108081600-108091600	Weak transcription	Stomach Smooth Muscle	stomach

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