Variant report

Variant	rs11822155
Chromosome Location	chr11:57528184-57528185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57528048..57531097-chr11:57548778..57551270,4	MCF-7	breast:
2	chr11:57527671..57530404-chr11:57570684..57574039,3	MCF-7	breast:
3	chr11:57508174..57510185-chr11:57528141..57530575,2	K562	blood:
4	chr11:57527376..57533264-chr11:57564914..57570096,15	MCF-7	breast:
5	chr11:57527762..57530093-chr11:57547915..57549720,2	K562	blood:

Variant related genes	Relation type
ENSG00000198561	Chromatin interaction
ENSG00000254732	Chromatin interaction
ENSG00000211450	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10128604	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11229099	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11229100	1.00[AMR][1000 genomes]
rs11229120	1.00[AMR][1000 genomes]
rs11229140	1.00[AMR][1000 genomes]
rs11229145	1.00[AMR][1000 genomes]
rs11229149	1.00[AMR][1000 genomes]
rs11229156	1.00[AMR][1000 genomes]
rs11501572	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11570208	1.00[AMR][1000 genomes]
rs12271969	1.00[AMR][1000 genomes]
rs12278818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283063	1.00[AMR][1000 genomes]
rs12284645	1.00[AMR][1000 genomes]
rs12286450	1.00[AMR][1000 genomes]
rs12291050	1.00[AMR][1000 genomes]
rs12291343	1.00[AMR][1000 genomes]
rs12292393	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292647	1.00[AFR][1000 genomes]
rs17152027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2076895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57510400-57528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:57511800-57528800	Weak transcription	Fetal Brain Male	brain
3	chr11:57512000-57528800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:57512200-57528800	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:57512400-57528800	Weak transcription	HSMM	muscle
6	chr11:57512600-57528800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:57512800-57528800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:57513000-57528800	Weak transcription	HSMMtube	muscle
9	chr11:57513200-57528600	Weak transcription	NHEK	skin
10	chr11:57513600-57528800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:57513600-57528800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:57513600-57528800	Weak transcription	Colonic Mucosa	Colon
13	chr11:57513600-57529200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:57513600-57531200	Weak transcription	Gastric	stomach
15	chr11:57513800-57528600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:57513800-57528600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:57513800-57528800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:57513800-57528800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:57513800-57528800	Weak transcription	Dnd41	blood
20	chr11:57514000-57528800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:57514200-57530000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:57514400-57528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:57514400-57528800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:57514600-57528800	Weak transcription	Placenta	Placenta
25	chr11:57514800-57528600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:57514800-57528600	Weak transcription	NH-A	brain
27	chr11:57514800-57528800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:57514800-57528800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:57514800-57528800	Weak transcription	Brain Angular Gyrus	brain
30	chr11:57514800-57528800	Weak transcription	Brain Germinal Matrix	brain
31	chr11:57514800-57528800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:57514800-57529200	Weak transcription	Lung	lung
33	chr11:57514800-57529200	Weak transcription	Thymus	Thymus
34	chr11:57515000-57528600	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:57515000-57528800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:57515200-57528800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:57515400-57528600	Weak transcription	Fetal Stomach	stomach
38	chr11:57516000-57528800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:57516600-57528800	Weak transcription	Primary B cells from cord blood	blood
40	chr11:57516600-57528800	Weak transcription	Brain Anterior Caudate	brain
41	chr11:57516600-57529200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:57516800-57528800	Weak transcription	Fetal Kidney	kidney
43	chr11:57516800-57528800	Weak transcription	Fetal Thymus	thymus
44	chr11:57517200-57528800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:57518800-57528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:57518800-57528800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:57519600-57528200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:57519800-57528800	Weak transcription	Right Ventricle	heart
49	chr11:57520600-57528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:57520800-57528800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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