Variant report

Variant	rs11822779
Chromosome Location	chr11:8632551-8632552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8630210..8632971-chr11:8639993..8641815,2	K562	blood:
2	chr11:8630374..8632927-chr11:8712700..8714781,2	K562	blood:
3	chr11:8626986..8629942-chr11:8631713..8635066,3	K562	blood:

Variant related genes	Relation type
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11820339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7116588	0.82[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7126521	0.82[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11822779	GALNTL4	cis	parietal	SCAN
rs11822779	OR52I1	cis	parietal	SCAN
rs11822779	RPL27A	cis	parietal	SCAN
rs11822779	OR51M1	cis	cerebellum	SCAN
rs11822779	LYVE1	cis	parietal	SCAN
rs11822779	TMEM9B	cis	parietal	SCAN
rs11822779	OR52I1	cis	cerebellum	SCAN

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8623400-8634200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:8626000-8637000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:8626000-8637200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:8626200-8637200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:8626400-8634000	Weak transcription	Placenta	Placenta
9	chr11:8626400-8634200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:8626400-8636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:8626400-8636200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:8626400-8636800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:8626400-8637200	Weak transcription	Pancreas	Pancrea
14	chr11:8626400-8637400	Weak transcription	Adipose Nuclei	Adipose
15	chr11:8626400-8638400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:8626400-8638400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
18	chr11:8626600-8637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:8626600-8639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
21	chr11:8626800-8637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:8626800-8637200	Weak transcription	Esophagus	oesophagus
23	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
24	chr11:8627600-8637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:8627800-8637000	Weak transcription	HMEC	breast
26	chr11:8627800-8637200	Weak transcription	NHEK	skin
27	chr11:8627800-8642400	Weak transcription	A549	lung
28	chr11:8628000-8635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:8628000-8637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:8628400-8634200	Weak transcription	HSMM	muscle
31	chr11:8628800-8637200	Weak transcription	Primary T cells from cord blood	blood
32	chr11:8629200-8638000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:8629400-8635200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:8630000-8634200	Weak transcription	Liver	Liver
35	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:8630400-8634200	Weak transcription	Aorta	Aorta
37	chr11:8630600-8633800	Weak transcription	Lung	lung
38	chr11:8630600-8635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:8630600-8653000	Weak transcription	Osteobl	bone
40	chr11:8630800-8633400	Weak transcription	HSMMtube	muscle
41	chr11:8630800-8634000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:8630800-8634400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:8630800-8637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:8630800-8638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:8630800-8638400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:8630800-8645400	Weak transcription	NHLF	lung
47	chr11:8630800-8645600	Weak transcription	NH-A	brain
48	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
49	chr11:8631000-8637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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