Variant report

Variant	rs11822837
Chromosome Location	chr11:46700941-46700942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46693214..46695028-chr11:46698382..46701368,2	K562	blood:
2	chr11:46699401..46701955-chr11:46706873..46709841,3	K562	blood:
3	chr11:46684772..46686521-chr11:46700565..46703053,2	K562	blood:
4	chr11:46637903..46639684-chr11:46699527..46702223,2	MCF-7	breast:
5	chr11:46696407..46698533-chr11:46699721..46701247,2	MCF-7	breast:
6	chr11:46697367..46699495-chr11:46700112..46702121,3	K562	blood:
7	chr11:46698989..46701507-chr11:46716489..46718835,2	K562	blood:

Variant related genes	Relation type
ENSG00000175220	Chromatin interaction
ENSG00000175224	Chromatin interaction
ENSG00000180423	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11038933	1.00[CHB][hapmap]
rs11038965	1.00[MEX][hapmap]
rs11821779	1.00[ASW][hapmap]
rs12287998	1.00[CEU][hapmap]
rs12797858	1.00[CEU][hapmap]
rs12805342	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2306031	1.00[MEX][hapmap]
rs3136494	1.00[TSI][hapmap]
rs4268467	1.00[CHB][hapmap]
rs4447137	1.00[ASW][hapmap]
rs4551720	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46667200-46717000	Strong transcription	Brain Germinal Matrix	brain
2	chr11:46689600-46706200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:46691600-46705600	Weak transcription	Fetal Brain Male	brain
4	chr11:46691600-46709200	Weak transcription	HUVEC	blood vessel
5	chr11:46695200-46701600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:46697200-46701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:46697200-46705200	Strong transcription	Fetal Brain Female	brain
8	chr11:46697200-46705800	Strong transcription	Thymus	Thymus
9	chr11:46697200-46716000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:46697200-46721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:46697400-46703800	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr11:46697600-46701600	Weak transcription	Hela-S3	cervix
13	chr11:46697800-46704200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:46697800-46704800	Weak transcription	Fetal Heart	heart
15	chr11:46697800-46706200	Strong transcription	Rectal Smooth Muscle	rectum
16	chr11:46697800-46709200	Strong transcription	Fetal Stomach	stomach
17	chr11:46698000-46704000	Strong transcription	NHLF	lung
18	chr11:46698000-46708800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:46698000-46708800	Strong transcription	Stomach Smooth Muscle	stomach
20	chr11:46698000-46718600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:46698200-46703800	Strong transcription	Aorta	Aorta
22	chr11:46698200-46704400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:46698200-46705600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:46698200-46706000	Strong transcription	Fetal Lung	lung
25	chr11:46698200-46706200	Strong transcription	Dnd41	blood
26	chr11:46698200-46708600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:46698400-46703200	Strong transcription	HSMMtube	muscle
28	chr11:46698400-46703600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:46698400-46703800	Strong transcription	Colon Smooth Muscle	Colon
30	chr11:46698400-46704200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:46698400-46709000	Weak transcription	Fetal Kidney	kidney
32	chr11:46698400-46719400	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:46698600-46703000	Strong transcription	NHDF-Ad	bronchial
34	chr11:46698600-46703600	Strong transcription	Ovary	ovary
35	chr11:46698600-46704400	Strong transcription	Small Intestine	intestine
36	chr11:46698600-46704600	Strong transcription	HepG2	liver
37	chr11:46698600-46704800	Strong transcription	HSMM	muscle
38	chr11:46698600-46705000	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr11:46698600-46705800	Strong transcription	Gastric	stomach
40	chr11:46698600-46706600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:46698800-46703800	Strong transcription	Brain Anterior Caudate	brain
42	chr11:46698800-46704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:46698800-46705000	Strong transcription	Brain Cingulate Gyrus	brain
44	chr11:46698800-46706200	Strong transcription	Fetal Thymus	thymus
45	chr11:46699000-46701200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:46699000-46702600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:46699000-46704200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr11:46699000-46704800	Strong transcription	Brain Hippocampus Middle	brain
49	chr11:46699000-46704800	Strong transcription	Brain Substantia Nigra	brain
50	chr11:46699000-46704800	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links