Variant report

Variant	rs11823548
Chromosome Location	chr11:66829315-66829316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66828869..66831159-chr11:67140128..67142518,2	MCF-7	breast:
2	chr11:66786143..66803039-chr11:66815769..66832347,160	MCF-7	breast:
3	chr11:66786222..66802522-chr11:66819452..66831805,83	MCF-7	breast:
4	chr11:66743582..66746541-chr11:66827594..66829913,2	MCF-7	breast:
5	chr11:66822518..66826076-chr11:66828864..66833150,3	K562	blood:
6	chr11:66761490..66778711-chr11:66821814..66832221,36	MCF-7	breast:
7	chr11:66755492..66757024-chr11:66826959..66829610,2	MCF-7	breast:
8	chr11:66826862..66831574-chr11:66885038..66887817,5	MCF-7	breast:
9	chr11:66827940..66829622-chr11:66832632..66835357,2	K562	blood:
10	chr11:66621391..66624288-chr11:66828096..66830309,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252709	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000173227	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11227673	0.82[EUR][1000 genomes]
rs12803688	0.82[EUR][1000 genomes]
rs4930407	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56012018	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7933721	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
3	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66825000-66829600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:66825200-66832000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66825200-66838800	Weak transcription	Spleen	Spleen
4	chr11:66825200-66841400	Weak transcription	Aorta	Aorta
5	chr11:66825200-66849200	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:66825400-66833200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:66825400-66833800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:66825400-66838800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:66825400-66839000	Weak transcription	Lung	lung
10	chr11:66825400-66839000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:66825400-66839200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:66825400-66849400	Weak transcription	Ovary	ovary
13	chr11:66825800-66831400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:66826200-66829600	Weak transcription	Stomach Mucosa	stomach
15	chr11:66826600-66829600	Weak transcription	Gastric	stomach
16	chr11:66826600-66839000	Weak transcription	Fetal Intestine Large	intestine
17	chr11:66826800-66831800	Weak transcription	Fetal Heart	heart
18	chr11:66827400-66829800	Strong transcription	Fetal Intestine Small	intestine
19	chr11:66827400-66831800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:66827600-66829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:66827600-66841800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:66827800-66829800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:66828000-66829800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:66828000-66834000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:66828000-66839000	Weak transcription	NH-A	brain
26	chr11:66828000-66845600	Weak transcription	Osteobl	bone
27	chr11:66828200-66829400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:66828200-66829400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:66828200-66829600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:66828400-66829400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:66828400-66829400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:66828400-66829400	Weak transcription	Esophagus	oesophagus
33	chr11:66828400-66829400	Weak transcription	Placenta	Placenta
34	chr11:66828400-66829600	Weak transcription	Pancreas	Pancrea
35	chr11:66828400-66829600	Weak transcription	A549	lung
36	chr11:66828400-66829600	Weak transcription	Hela-S3	cervix
37	chr11:66828400-66832000	Weak transcription	Left Ventricle	heart
38	chr11:66828400-66832200	Weak transcription	Right Ventricle	heart
39	chr11:66828400-66839000	Weak transcription	Right Atrium	heart
40	chr11:66828600-66829400	Weak transcription	Liver	Liver
41	chr11:66828600-66829400	Weak transcription	HMEC	breast
42	chr11:66828600-66829600	Weak transcription	Fetal Stomach	stomach
43	chr11:66828800-66833200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:66829200-66829400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:66829200-66829800	Genic enhancers	NHEK	skin

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