Variant report

Variant	rs11823597
Chromosome Location	chr11:67255855-67255856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr11:67254959-67255985	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:67255646-67255873	Hela-S3	cervix:	n/a	n/a
3	STAT5A	chr11:67255381-67255878	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67250117..67252279-chr11:67255664..67259072,3	MCF-7	breast:
2	chr11:67231244..67235869-chr11:67255079..67259378,6	MCF-7	breast:
3	chr11:67255717..67258681-chr11:67274499..67276548,2	K562	blood:

Variant related genes	Relation type
AIP	TF binding region
ENSG00000110711	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000167797	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11820536	1.00[AMR][1000 genomes]
rs11822066	1.00[AMR][1000 genomes]
rs11822907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824480	1.00[AMR][1000 genomes]
rs11825218	1.00[AMR][1000 genomes]
rs11827571	1.00[AMR][1000 genomes]
rs11827998	1.00[AMR][1000 genomes]
rs17881242	1.00[AMR][1000 genomes]
rs17881313	1.00[AMR][1000 genomes]
rs17885191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
6	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
7	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
8	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
9	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
11	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
12	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
13	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
14	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
15	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
16	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
17	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
18	nsv527056	chr11:67207426-67294308	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
19	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
20	nsv1052919	chr11:67252337-67306030	Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
21	nsv541078	chr11:67252337-67306030	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67251000-67257000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:67251000-67271000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:67251200-67257400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:67251200-67257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:67251400-67257000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:67251400-67268000	Weak transcription	HSMMtube	muscle
7	chr11:67251400-67271200	Weak transcription	HSMM	muscle
8	chr11:67251400-67271400	Weak transcription	HUVEC	blood vessel
9	chr11:67251600-67256400	Weak transcription	HMEC	breast
10	chr11:67251600-67256600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:67251600-67256600	Weak transcription	Aorta	Aorta
12	chr11:67251600-67256800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:67251600-67257200	Weak transcription	A549	lung
14	chr11:67251600-67259800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:67251600-67268400	Weak transcription	NH-A	brain
16	chr11:67251600-67268600	Strong transcription	Fetal Intestine Small	intestine
17	chr11:67251600-67270600	Weak transcription	Fetal Heart	heart
18	chr11:67251600-67271400	Weak transcription	NHDF-Ad	bronchial
19	chr11:67252000-67257600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:67252400-67256800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:67252400-67256800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:67252600-67257600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:67252600-67270000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:67252600-67270200	Strong transcription	Fetal Stomach	stomach
25	chr11:67252600-67271600	Weak transcription	Psoas Muscle	Psoas
26	chr11:67252800-67270000	Weak transcription	Fetal Brain Male	brain
27	chr11:67252800-67271400	Weak transcription	Right Atrium	heart
28	chr11:67253200-67257200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:67253800-67256000	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr11:67253800-67258600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:67253800-67262600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:67253800-67263800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:67253800-67269600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:67254000-67256000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:67254000-67256200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:67254000-67256600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:67254000-67256800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:67254000-67258400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:67254000-67259000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:67254000-67259000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr11:67254000-67259200	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:67254000-67259400	Strong transcription	Fetal Intestine Large	intestine
43	chr11:67254000-67261800	Strong transcription	Brain Hippocampus Middle	brain
44	chr11:67254000-67265800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:67254000-67268000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:67254000-67268000	Strong transcription	Brain Germinal Matrix	brain
47	chr11:67254000-67268000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:67254000-67270000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:67254000-67270800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:67254000-67271000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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