Variant report

Variant	rs11823883
Chromosome Location	chr11:64654788-64654789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64544541..64547217-chr11:64651597..64655182,4	K562	blood:
2	chr11:64653740..64655395-chr11:64682265..64684591,2	MCF-7	breast:
3	chr11:64651561..64659485-chr11:64681552..64686807,18	K562	blood:
4	chr11:64594516..64598038-chr11:64651290..64654943,3	K562	blood:
5	chr11:64654051..64656585-chr11:65027295..65030024,2	K562	blood:
6	chr11:64654425..64656235-chr11:64883004..64885352,2	K562	blood:

Variant related genes	Relation type
ENSG00000110046	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000014138	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73474770	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
4	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
5	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
6	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
7	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
8	nsv897708	chr11:64602757-64695271	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
9	nsv360	chr11:64632395-64659636	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1003 gene(s)	inside rSNPs	diseases
10	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
11	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64647000-64655200	Weak transcription	Esophagus	oesophagus
2	chr11:64647000-64655400	Weak transcription	Ovary	ovary
3	chr11:64647200-64655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:64647200-64655600	Weak transcription	Gastric	stomach
5	chr11:64647400-64655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:64647400-64655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:64648000-64655200	Weak transcription	Left Ventricle	heart
8	chr11:64648000-64655200	Weak transcription	Lung	lung
9	chr11:64648000-64655200	Weak transcription	Pancreas	Pancrea
10	chr11:64648200-64655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:64648400-64655600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:64648600-64654800	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:64648600-64655200	Weak transcription	Thymus	Thymus
14	chr11:64648800-64654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:64649000-64655000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:64649200-64655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:64649200-64655200	Weak transcription	Right Atrium	heart
18	chr11:64649400-64654800	Weak transcription	GM12878-XiMat	blood
19	chr11:64650200-64655200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:64650800-64655000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:64650800-64655000	Enhancers	HepG2	liver
22	chr11:64651400-64655200	Weak transcription	Right Ventricle	heart
23	chr11:64651600-64654800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:64651600-64658600	Enhancers	Placenta	Placenta
25	chr11:64652000-64655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:64652000-64655000	Weak transcription	Dnd41	blood
27	chr11:64652200-64655000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:64652200-64655000	Enhancers	Fetal Intestine Large	intestine
29	chr11:64652200-64655000	Enhancers	Fetal Intestine Small	intestine
30	chr11:64652200-64656400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:64652400-64655200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:64652800-64655200	Enhancers	Stomach Mucosa	stomach
33	chr11:64652800-64659800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:64653000-64654800	Weak transcription	Primary B cells from cord blood	blood
35	chr11:64653000-64655000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:64653000-64655200	Weak transcription	Colonic Mucosa	Colon
37	chr11:64653200-64654800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:64653200-64655000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:64653200-64655000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:64653200-64655000	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:64653200-64655000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:64653200-64655000	Weak transcription	Spleen	Spleen
43	chr11:64653200-64655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:64653200-64655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:64653400-64654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:64653400-64655000	Weak transcription	Fetal Heart	heart
47	chr11:64653400-64655200	Weak transcription	HMEC	breast
48	chr11:64653600-64654800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:64653600-64654800	Weak transcription	Fetal Thymus	thymus
50	chr11:64653600-64655000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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