Variant report

Variant	rs11824116
Chromosome Location	chr11:72895919-72895920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72851855..72853824-chr11:72895411..72897529,2	MCF-7	breast:
2	chr11:72895656..72896982-chr11:72928970..72930264,6	MCF-7	breast:
3	chr11:72496110..72498677-chr11:72895219..72897612,2	MCF-7	breast:
4	chr11:72852155..72854125-chr11:72895841..72897456,2	MCF-7	breast:
5	chr11:72893314..72909448-chr11:72922899..72955285,117	MCF-7	breast:
6	chr11:72895464..72896980-chr11:73000175..73001184,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260401	Chromatin interaction
ENSG00000215841	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000171631	Chromatin interaction
ENSG00000175591	Chromatin interaction
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1790078	1.00[EUR][1000 genomes]
rs1790079	1.00[EUR][1000 genomes]
rs1790082	1.00[EUR][1000 genomes]
rs3933402	1.00[TSI][hapmap]
rs4536255	1.00[EUR][1000 genomes]
rs57741648	1.00[EUR][1000 genomes]
rs7123525	1.00[EUR][1000 genomes]
rs73538714	1.00[EUR][1000 genomes]
rs7935982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72888800-72899400	Weak transcription	Aorta	Aorta
2	chr11:72889000-72896200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:72889200-72896000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:72889200-72896000	Weak transcription	NH-A	brain
5	chr11:72889200-72896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:72889200-72896200	Weak transcription	Gastric	stomach
7	chr11:72889400-72896200	Weak transcription	Hela-S3	cervix
8	chr11:72889600-72896000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:72889600-72896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:72889600-72896600	Weak transcription	Right Ventricle	heart
11	chr11:72890400-72896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:72893600-72896000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:72893600-72896800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:72894400-72896000	Weak transcription	NHEK	skin
15	chr11:72894400-72896400	Enhancers	K562	blood
16	chr11:72894400-72896800	Weak transcription	Stomach Mucosa	stomach
17	chr11:72894400-72897200	Weak transcription	Right Atrium	heart
18	chr11:72894600-72896000	Weak transcription	Spleen	Spleen
19	chr11:72894600-72896200	Weak transcription	Pancreas	Pancrea
20	chr11:72894600-72896200	Weak transcription	HepG2	liver
21	chr11:72894600-72900600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:72894800-72896000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:72894800-72896200	Weak transcription	Colonic Mucosa	Colon
24	chr11:72894800-72896200	Weak transcription	Left Ventricle	heart
25	chr11:72894800-72896200	Weak transcription	Ovary	ovary
26	chr11:72894800-72896200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:72894800-72896200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:72894800-72899000	Weak transcription	Fetal Heart	heart
29	chr11:72894800-72902200	Weak transcription	Fetal Intestine Small	intestine
30	chr11:72895600-72896000	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:72895600-72896000	Enhancers	HUVEC	blood vessel
32	chr11:72895800-72896000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:72895800-72896000	Enhancers	Primary B cells from cord blood	blood
34	chr11:72895800-72896000	Enhancers	GM12878-XiMat	blood
35	chr11:72895800-72896600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr11:72895800-72897600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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