Variant report

Variant	rs11824474
Chromosome Location	chr11:119929681-119929682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119924091..119926607-chr11:119929292..119931219,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11822611	1.00[AMR][1000 genomes]
rs11824450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887269	1.00[AMR][1000 genomes]
rs56704215	0.83[AMR][1000 genomes]
rs58844530	0.83[AMR][1000 genomes]
rs61753082	0.83[AMR][1000 genomes]
rs73575948	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119922600-119936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119925000-119934200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:119926000-119929800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:119926000-119930200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:119926000-119930600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:119927400-119929800	Enhancers	Fetal Intestine Small	intestine
7	chr11:119927800-119932800	Weak transcription	Brain Anterior Caudate	brain
8	chr11:119927800-119932800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:119928200-119930600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:119928400-119932200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:119928800-119932400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:119929000-119929800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:119929000-119932200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:119929000-119932400	Weak transcription	Fetal Brain Male	brain
15	chr11:119929000-119932400	Weak transcription	Fetal Brain Female	brain
16	chr11:119929200-119932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:119929200-119932800	Weak transcription	HMEC	breast
18	chr11:119929400-119929800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:119929400-119931600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:119929400-119932800	Weak transcription	Esophagus	oesophagus
21	chr11:119929400-119932800	Weak transcription	NHEK	skin
22	chr11:119929400-119934000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:119929600-119930000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:119929600-119930400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:119929600-119930600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:119929600-119930600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr11:119929600-119930600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr11:119929600-119930600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:119929600-119932000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:119929600-119932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:119929600-119932200	Weak transcription	Brain Germinal Matrix	brain

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