Variant report

Variant	rs11824646
Chromosome Location	chr11:64783645-64783646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64783383-64783686	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:64780704-64783907	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr11:64783420-64783890	K562	blood:	n/a	n/a

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64764464..64766186-chr11:64782207..64784388,2	K562	blood:
2	chr11:64772580..64786543-chr11:64875055..64887722,37	MCF-7	breast:
3	chr11:64778534..64781013-chr11:64781668..64784168,3	MCF-7	breast:
4	chr11:64761070..64763113-chr11:64782531..64784584,2	K562	blood:
5	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
6	chr11:64781559..64786098-chr11:64888152..64890441,5	MCF-7	breast:
7	chr11:64780520..64784503-chr11:64834796..64838390,5	MCF-7	breast:
8	chr11:64780460..64784208-chr11:64862018..64864261,3	K562	blood:
9	chr11:64642873..64648975-chr11:64779425..64783727,9	MCF-7	breast:
10	chr11:64691872..64694652-chr11:64781595..64784560,2	K562	blood:
11	chr11:64683021..64685981-chr11:64781625..64784265,4	MCF-7	breast:
12	chr11:64778507..64787901-chr11:64877920..64890097,31	K562	blood:
13	chr11:64779881..64786783-chr11:64876081..64880870,13	MCF-7	breast:
14	chr11:64783090..64786003-chr11:64844320..64846596,3	MCF-7	breast:
15	chr11:64782765..64784677-chr11:64844790..64847244,2	MCF-7	breast:
16	chr11:64782119..64784477-chr11:64813341..64814905,2	MCF-7	breast:
17	chr11:64781815..64785733-chr11:64830700..64833952,3	MCF-7	breast:
18	chr11:64779637..64784611-chr11:64849890..64854060,9	K562	blood:
19	chr11:64781693..64784252-chr11:64827327..64829336,2	MCF-7	breast:
20	chr11:64779047..64780768-chr11:64783130..64785775,3	MCF-7	breast:
21	chr11:64778393..64787449-chr11:64877655..64886980,25	K562	blood:
22	chr11:64780038..64784183-chr11:64845056..64847666,6	K562	blood:
23	chr11:64782849..64784408-chr11:64786421..64789258,2	MCF-7	breast:
24	chr11:64779668..64784219-chr11:64849890..64854919,7	K562	blood:
25	chr11:64689263..64691666-chr11:64782887..64784487,2	K562	blood:
26	chr11:64779861..64784378-chr11:64881512..64885598,8	MCF-7	breast:
27	chr11:64571261..64574122-chr11:64781837..64784528,2	K562	blood:
28	chr11:64611421..64614176-chr11:64782989..64786019,3	MCF-7	breast:
29	chr11:64779401..64787584-chr11:64862745..64867550,9	MCF-7	breast:
30	chr11:64779913..64786139-chr11:64862018..64866625,10	K562	blood:
31	chr11:64660429..64663235-chr11:64780866..64783681,3	MCF-7	breast:

No data

Variant related genes	Relation type
ARL2	TF binding region
ENSG00000149823	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000168062	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000229719	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000162300	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11231923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146543	0.84[EUR][1000 genomes]
rs17146569	0.97[EUR][1000 genomes]
rs17146575	0.97[EUR][1000 genomes]
rs17673281	0.84[EUR][1000 genomes]
rs4081424	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717149	0.90[EUR][1000 genomes]
rs7103328	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64782400-64783800	Weak transcription	Aorta	Aorta
2	chr11:64782400-64783800	Weak transcription	Esophagus	oesophagus
3	chr11:64782400-64784200	Enhancers	Lung	lung
4	chr11:64782400-64785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:64782400-64786000	Weak transcription	Ovary	ovary
6	chr11:64782400-64794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:64782600-64783800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:64782600-64783800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:64782600-64784000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:64782600-64784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:64782600-64784000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:64782600-64784000	Enhancers	Primary B cells from cord blood	blood
13	chr11:64782600-64784000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr11:64782600-64784000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:64782600-64784000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:64782600-64784000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:64782600-64784000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:64782600-64784200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:64782600-64784200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:64782600-64784200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:64782600-64784200	Weak transcription	Fetal Brain Female	brain
22	chr11:64782600-64784200	Weak transcription	Fetal Lung	lung
23	chr11:64782600-64784600	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:64782600-64784800	Weak transcription	Colonic Mucosa	Colon
25	chr11:64782600-64785000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:64782600-64785400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:64782600-64785400	Weak transcription	Primary T cells from cord blood	blood
28	chr11:64782600-64785400	Weak transcription	HSMM	muscle
29	chr11:64782600-64785400	Weak transcription	Osteobl	bone
30	chr11:64782600-64785600	Weak transcription	Gastric	stomach
31	chr11:64782600-64785800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:64782600-64785800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:64782600-64785800	Weak transcription	Left Ventricle	heart
34	chr11:64782600-64786000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:64782600-64787200	Weak transcription	Fetal Kidney	kidney
36	chr11:64782600-64794200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:64782600-64794400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:64782600-64794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:64782600-64794400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:64782600-64794400	Weak transcription	Small Intestine	intestine
41	chr11:64782600-64794400	Weak transcription	HSMMtube	muscle
42	chr11:64782600-64794400	Weak transcription	HUVEC	blood vessel
43	chr11:64782600-64794400	Weak transcription	NH-A	brain
44	chr11:64782600-64794400	Weak transcription	NHDF-Ad	bronchial
45	chr11:64782600-64794600	Weak transcription	Right Atrium	heart
46	chr11:64782800-64783800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:64782800-64783800	Weak transcription	Spleen	Spleen
48	chr11:64782800-64784000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:64782800-64784000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:64782800-64784000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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