Variant report

Variant	rs11824775
Chromosome Location	chr11:63361064-63361065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63360255..63361264-chr11:63402984..63404028,9	MCF-7	breast:
2	chr11:63360223..63361274-chr11:63403046..63403898,6	MCF-7	breast:
3	chr11:63246009..63246898-chr11:63360308..63361267,3	MCF-7	breast:
4	chr11:63350064..63351574-chr11:63359213..63361549,2	K562	blood:
5	chr11:63360676..63361240-chr11:63506160..63506830,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11822733	1.00[AFR][1000 genomes]
rs12271683	0.86[AFR][1000 genomes]
rs12275043	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63363000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:63343000-63366200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
4	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
5	chr11:63348400-63366600	Weak transcription	HSMM	muscle
6	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:63350200-63362600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:63350200-63366800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:63350200-63370000	Weak transcription	Small Intestine	intestine
10	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
11	chr11:63350800-63365600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:63351000-63364200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:63351800-63366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:63352000-63362000	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr11:63352400-63363000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:63352600-63367000	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr11:63352800-63361600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:63353200-63364000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:63353400-63366200	Weak transcription	A549	lung
20	chr11:63354000-63366000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:63355200-63361200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:63355200-63365800	Strong transcription	Lung	lung
23	chr11:63355200-63366200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:63355400-63366200	Strong transcription	Liver	Liver
25	chr11:63355600-63362400	Strong transcription	Ovary	ovary
26	chr11:63355600-63363200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:63356200-63361800	Genic enhancers	Brain Substantia Nigra	brain
28	chr11:63356200-63363200	Genic enhancers	Brain Cingulate Gyrus	brain
29	chr11:63356800-63363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:63357200-63366400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:63357200-63369600	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:63357600-63380400	Weak transcription	NHLF	lung
34	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
35	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:63358200-63363000	Weak transcription	Osteobl	bone
37	chr11:63358200-63363600	Genic enhancers	Brain Inferior Temporal Lobe	brain
38	chr11:63358200-63364000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:63358400-63365200	Weak transcription	Aorta	Aorta
40	chr11:63358400-63369800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:63358600-63365400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:63358600-63366600	Weak transcription	Spleen	Spleen
43	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:63359200-63363000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:63360000-63361400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:63360000-63361800	Strong transcription	HSMMtube	muscle
49	chr11:63360000-63362000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:63360200-63361600	Genic enhancers	Adipose Nuclei	Adipose

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