Variant report

Variant	rs11825295
Chromosome Location	chr11:33658687-33658688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33651094..33655040-chr11:33655885..33660180,5	MCF-7	breast:
2	chr11:33471662..33474349-chr11:33657148..33659108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255207	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032326	1.00[AFR][1000 genomes]
rs11032334	1.00[EUR][1000 genomes]
rs11821409	1.00[AFR][1000 genomes]
rs11826596	1.00[AFR][1000 genomes]
rs12288810	1.00[EUR][1000 genomes]
rs12293847	1.00[EUR][1000 genomes]
rs12294053	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33640600-33666400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:33640800-33673600	Weak transcription	Fetal Brain Male	brain
3	chr11:33642600-33673600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:33643000-33673600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:33652200-33659600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:33652400-33659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:33654200-33666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:33654200-33666600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:33655200-33659000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:33656000-33658800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:33656000-33659400	Enhancers	HMEC	breast
12	chr11:33656000-33667200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:33656200-33659200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:33656200-33659400	Enhancers	NHEK	skin
15	chr11:33656200-33667200	Weak transcription	Fetal Brain Female	brain
16	chr11:33656800-33667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:33656800-33673600	Weak transcription	NH-A	brain
18	chr11:33657400-33673600	Weak transcription	HSMMtube	muscle
19	chr11:33657600-33659200	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:33657800-33659200	Enhancers	Hela-S3	cervix
21	chr11:33657800-33673600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:33657800-33688400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:33658200-33659000	Enhancers	Right Atrium	heart
24	chr11:33658400-33658800	Enhancers	Esophagus	oesophagus
25	chr11:33658400-33662800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:33658600-33667200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:33658600-33667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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