Variant report

Variant	rs11825374
Chromosome Location	chr11:47901510-47901511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11039489	1.00[AMR][1000 genomes]
rs11039492	1.00[AMR][1000 genomes]
rs11039506	1.00[AMR][1000 genomes]
rs11039507	1.00[AMR][1000 genomes]
rs11822835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272622	1.00[AMR][1000 genomes]
rs12275893	1.00[AMR][1000 genomes]
rs12279082	1.00[AMR][1000 genomes]
rs1228003	1.00[AMR][1000 genomes]
rs1228011	1.00[AMR][1000 genomes]
rs1228016	1.00[AMR][1000 genomes]
rs1228027	1.00[AMR][1000 genomes]
rs1228029	1.00[AMR][1000 genomes]
rs1228037	1.00[AMR][1000 genomes]
rs1228045	1.00[AMR][1000 genomes]
rs12288995	1.00[AMR][1000 genomes]
rs12294321	1.00[AMR][1000 genomes]
rs12294477	1.00[AMR][1000 genomes]
rs1681606	1.00[AMR][1000 genomes]
rs1681638	1.00[AMR][1000 genomes]
rs2697809	1.00[AMR][1000 genomes]
rs2930185	1.00[AMR][1000 genomes]
rs2930187	1.00[AMR][1000 genomes]
rs2950889	1.00[AMR][1000 genomes]
rs4387319	1.00[AMR][1000 genomes]
rs7102191	1.00[AMR][1000 genomes]
rs7941419	1.00[AMR][1000 genomes]
rs900700	1.00[AMR][1000 genomes]
rs922959	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47900600-47903200	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:47900800-47901600	Enhancers	Spleen	Spleen
3	chr11:47900800-47901600	Flanking Active TSS	GM12878-XiMat	blood
4	chr11:47900800-47903200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:47900800-47903600	Enhancers	Primary B cells from cord blood	blood
6	chr11:47901000-47902600	Weak transcription	A549	lung
7	chr11:47901000-47903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:47901000-47903600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:47901200-47902600	Enhancers	Adipose Nuclei	Adipose
10	chr11:47901200-47903200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:47901400-47902800	Enhancers	Monocytes-CD14+_RO01746	blood

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