Variant report

Variant	rs11825858
Chromosome Location	chr11:72901673-72901674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72893314..72909448-chr11:72922899..72955285,117	MCF-7	breast:
2	chr11:72901328..72904232-chr11:73087529..73089470,2	MCF-7	breast:
3	chr11:72900219..72902837-chr11:73100123..73101971,2	MCF-7	breast:
4	chr11:72879197..72882028-chr11:72901333..72903011,2	K562	blood:

Variant related genes	Relation type
ENSG00000215841	Chromatin interaction
ENSG00000175591	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000260401	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11821736	1.00[MEX][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108924	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72894800-72902200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:72896200-72902600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:72896200-72916600	Enhancers	Placenta	Placenta
4	chr11:72896400-72902400	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:72896600-72902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:72896600-72902200	Enhancers	Right Ventricle	heart
7	chr11:72896600-72903600	Enhancers	Primary B cells from cord blood	blood
8	chr11:72896800-72906200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:72897200-72903400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:72897600-72909800	Weak transcription	Pancreas	Pancrea
11	chr11:72897800-72902000	Weak transcription	Colonic Mucosa	Colon
12	chr11:72897800-72903200	Weak transcription	Hela-S3	cervix
13	chr11:72897800-72903400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:72897800-72905800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:72898200-72903400	Weak transcription	HUVEC	blood vessel
16	chr11:72898800-72903000	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:72899000-72902600	Enhancers	Esophagus	oesophagus
18	chr11:72899000-72902600	Weak transcription	A549	lung
19	chr11:72899000-72903800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:72899000-72904400	Enhancers	GM12878-XiMat	blood
21	chr11:72899200-72902000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:72899600-72903200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:72899800-72902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:72899800-72902000	Weak transcription	NHEK	skin
25	chr11:72899800-72905600	Weak transcription	HSMMtube	muscle
26	chr11:72899800-72911400	Weak transcription	Lung	lung
27	chr11:72900000-72902000	Weak transcription	HMEC	breast
28	chr11:72900000-72911400	Weak transcription	Psoas Muscle	Psoas
29	chr11:72900400-72908000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:72900600-72918000	Enhancers	Fetal Intestine Large	intestine
31	chr11:72900800-72902800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:72901000-72904000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:72901000-72904400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr11:72901000-72904800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:72901200-72907800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:72901400-72902800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:72901400-72906200	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr11:72901400-72909000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:72901400-72913200	Weak transcription	Spleen	Spleen
40	chr11:72901600-72901800	Enhancers	Right Atrium	heart
41	chr11:72901600-72905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:72901600-72906000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:72901600-72909800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links