Variant report

Variant	rs11826108
Chromosome Location	chr11:107461903-107461904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr11:107460645-107463228	H1-hESC	embryonic stem cell:	n/a	chr11:107462100-107462109
2	CTCF	chr11:107461809-107461944	K562	blood:	n/a	n/a
3	MAX	chr11:107461676-107462194	SK-N-SH	brain:	n/a	n/a
4	E2F6	chr11:107461773-107462049	K562	blood:	n/a	chr11:107461782-107461791 chr11:107461981-107461991 chr11:107461889-107461899 chr11:107461961-107461970 chr11:107461944-107461953 chr11:107461776-107461785
5	CTCF	chr11:107461840-107461990	GM12874	blood:	n/a	n/a
6	CTCF	chr11:107461780-107461930	BJ	skin:	n/a	n/a
7	CTCF	chr11:107461780-107461930	AoAF	blood vessel:	n/a	n/a
8	POLR2A	chr11:107461723-107462459	H1-neurons	neurons:	n/a	n/a
9	CTCF	chr11:107461798-107461939	GM12892	blood:	n/a	n/a
10	CTCF	chr11:107461820-107461970	HCPEpiC	choroid plexus:	n/a	n/a
11	BHLHE40	chr11:107461790-107461988	K562	blood:	n/a	n/a
12	CTCF	chr11:107461800-107461950	RPTEC	kidney:	n/a	n/a
13	CTCF	chr11:107461780-107461930	HCT-116	colon:	n/a	n/a
14	CTBP2	chr11:107461332-107462899	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr11:107461860-107462010	GM12868	blood:	n/a	n/a
16	CTCF	chr11:107461800-107461950	BJ	skin:	n/a	n/a
17	CTCF	chr11:107461760-107461910	HVMF	connective:	n/a	n/a
18	CTCF	chr11:107461860-107462010	A549	lung:	n/a	n/a
19	CTCF	chr11:107461745-107462063	K562	blood:	n/a	n/a
20	CTCF	chr11:107461780-107461930	HEK293	kidney:	n/a	n/a
21	ZNF263	chr11:107461319-107463186	HEK293-T-REx	kidney:	n/a	chr11:107462571-107462580 chr11:107462634-107462643 chr11:107462184-107462193
22	CTCF	chr11:107461827-107461948	ProgFib	skin:	n/a	n/a
23	POLR2A	chr11:107461705-107462100	HCT-116	colon:	n/a	n/a
24	CTCF	chr11:107461743-107462022	IMR90	lung:	n/a	n/a
25	CTCF	chr11:107461780-107461930	HRE	kidney:	n/a	n/a
26	MAX	chr11:107461654-107462078	K562	blood:	n/a	n/a
27	CTCF	chr11:107461800-107461950	HPAF	blood vessel:	n/a	n/a
28	CTCF	chr11:107461820-107461970	GM12865	blood:	n/a	n/a
29	YY1	chr11:107461721-107462197	HepG2	liver:	n/a	chr11:107461980-107461994 chr11:107461978-107461989 chr11:107461780-107461794 chr11:107462089-107462103 chr11:107461981-107461995 chr11:107461947-107461958 chr11:107462088-107462097 chr11:107462034-107462043 chr11:107461947-107461956 chr11:107461978-107461992 chr11:107461944-107461953
30	CTCF	chr11:107461799-107461965	NHEK	skin:	n/a	n/a
31	CTCF	chr11:107461820-107461970	GM12867	blood:	n/a	n/a
32	MAX	chr11:107461768-107461964	K562	blood:	n/a	n/a
33	CTCF	chr11:107461760-107461910	K562	blood:	n/a	n/a
34	CHD2	chr11:107461771-107461903	HepG2	liver:	n/a	chr11:107461879-107461889
35	CTCF	chr11:107461840-107461990	GM12864	blood:	n/a	n/a
36	POLR2A	chr11:107461791-107462168	HCT-116	colon:	n/a	n/a
37	CTCF	chr11:107461800-107461950	HBMEC	blood vessel:	n/a	n/a
38	UBTF	chr11:107461728-107462144	K562	blood:	n/a	n/a
39	MAX	chr11:107461573-107462481	A549	lung:	n/a	n/a
40	CTCF	chr11:107461820-107461970	BE2_C	brain:	n/a	n/a
41	MAX	chr11:107461756-107462033	MCF-7	breast:	n/a	n/a
42	CTCF	chr11:107461812-107461932	Gliobla	brain:	n/a	n/a
43	CTCF	chr11:107461800-107461950	HMF	breast:	n/a	n/a
44	SIN3AK20	chr11:107461519-107462359	PANC-1	pancreas:	n/a	n/a
45	CTCF	chr11:107461820-107461970	SK-N-SH_RA	brain:	n/a	n/a
46	REST	chr11:107461800-107462148	PFSK-1	brain:	n/a	chr11:107462099-107462109 chr11:107461892-107461905
47	E2F6	chr11:107461806-107461954	K562	blood:	n/a	chr11:107461889-107461899 chr11:107461944-107461953
48	CTCF	chr11:107461800-107461950	WERI-Rb-1	eye:	n/a	n/a
49	CTCF	chr11:107461780-107461930	AG10803	skin:	n/a	n/a
50	CTCF	chr11:107461806-107461953	GM19239	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:107461894-107461944	K562	blood:	n/a
2	chr11:107461899-107461949	NHDF-neo	bronchial:	n/a
3	chr11:107461894-107461944	HCPEpiC	choroid plexus:	n/a
4	chr11:107461894-107461944	SK-N-SH_RA	brain:	n/a
5	chr11:107461894-107461944	T-47D	breast:	n/a
6	chr11:107461899-107461949	HIPEpiC	eye:	n/a
7	chr11:107461894-107461944	HEEpiC	esophagus:	n/a
8	chr11:107461894-107461944	HCT-116	colon:	n/a
9	chr11:107461899-107461949	HMEC	breast:	n/a
10	chr11:107461894-107461944	PrEC	prostate:	n/a
11	chr11:107461894-107461944	HMEC	breast:	n/a
12	chr11:107461899-107461949	HL-60	blood:	n/a
13	chr11:107461899-107461949	GM19239	blood:	n/a
14	chr11:107461899-107461949	MCF-7	breast:	n/a
15	chr11:107461899-107461949	GM12891	blood:	n/a
16	chr11:107461894-107461944	AoSMC	blood vessel:	n/a
17	chr11:107461899-107461949	ProgFib	skin:	n/a
18	chr11:107461899-107461949	AG09309	skin:	n/a
19	chr11:107461899-107461949	K562	blood:	n/a
20	chr11:107461899-107461949	IMR90	lung:	fetal
21	chr11:107461894-107461944	NH-A	brain:	n/a
22	chr11:107461894-107461944	HCF	heart:	n/a
23	chr11:107461899-107461949	AG10803	skin:	n/a
24	chr11:107461894-107461944	HRE	kidney:	n/a
25	chr11:107461894-107461944	MCF10A-Er-Src	breast:	n/a
26	chr11:107461894-107461944	Hepatocyte	liver:	n/a
27	chr11:107461894-107461944	U87	brain:	n/a
28	chr11:107461899-107461949	Hela-S3	cervix:	n/a
29	chr11:107461894-107461944	Jurkat	blood:	n/a
30	chr11:107461894-107461944	HRPEpiC	eye:	n/a
31	chr11:107461899-107461949	NB4	blood:	n/a
32	chr11:107461894-107461944	SK-N-MC	brain:	n/a
33	chr11:107461899-107461949	SK-N-SH	brain:	n/a
34	chr11:107461894-107461944	SK-N-SH	brain:	n/a
35	chr11:107461899-107461949	PANC-1	pancreas:	n/a
36	chr11:107461894-107461944	NHDF-neo	bronchial:	n/a
37	chr11:107461894-107461944	HIPEpiC	eye:	n/a
38	chr11:107461899-107461949	NHBE	bronchial:	n/a
39	chr11:107461899-107461949	BE2_C	brain:	n/a
40	chr11:107461894-107461944	A549	lung:	n/a
41	chr11:107461899-107461949	AG04449	skin:	fetal
42	chr11:107461899-107461949	A549	lung:	n/a
43	chr11:107461899-107461949	CMK	blood:	n/a
44	chr11:107461899-107461949	SK-N-SH_RA	brain:	n/a
45	chr11:107461894-107461944	PANC-1	pancreas:	n/a
46	chr11:107461899-107461949	HCM	heart:	n/a
47	chr11:107461894-107461944	BJ	skin:	n/a
48	chr11:107461899-107461949	HCT-116	colon:	n/a
49	chr11:107461899-107461949	HepG2	liver:	n/a
50	chr11:107461899-107461949	MCF10A-Er-Src	breast:	n/a

Variant related genes	Relation type
ENSG00000270969	TF binding region
ENSG00000268467	TF binding region
ELMOD1	TF binding region
ELMOD1	CpG island
ENSG00000270969	CpG island
ENSG00000268467	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17107127	1.00[AMR][1000 genomes]
rs72990749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107460400-107463000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:107460400-107463000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr11:107460400-107465200	Active TSS	Brain Anterior Caudate	brain
4	chr11:107460600-107462200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr11:107460600-107462600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:107460600-107462800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:107460600-107462800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:107460600-107462800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:107460600-107462800	Active TSS	Psoas Muscle	Psoas
10	chr11:107460600-107463000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr11:107460600-107463000	Bivalent/Poised TSS	Fetal Brain Female	brain
12	chr11:107460600-107465000	Active TSS	Brain Angular Gyrus	brain
13	chr11:107460800-107462000	Active TSS	Right Atrium	heart
14	chr11:107460800-107462200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:107460800-107462200	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr11:107460800-107462800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr11:107460800-107462800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:107460800-107463000	Enhancers	Spleen	Spleen
19	chr11:107461000-107462200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr11:107461000-107462800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:107461000-107462800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
22	chr11:107461200-107462000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
23	chr11:107461200-107462000	Bivalent/Poised TSS	Thymus	Thymus
24	chr11:107461200-107462200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:107461200-107462200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
26	chr11:107461200-107462200	Bivalent/Poised TSS	K562	blood
27	chr11:107461200-107462600	Bivalent/Poised TSS	NHDF-Ad	bronchial
28	chr11:107461200-107462800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:107461200-107462800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:107461200-107462800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
31	chr11:107461200-107462800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr11:107461200-107462800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:107461200-107462800	Active TSS	Fetal Heart	heart
34	chr11:107461200-107463000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
35	chr11:107461200-107463000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:107461200-107463000	Bivalent/Poised TSS	A549	lung
37	chr11:107461200-107463000	Active TSS	HSMM	muscle
38	chr11:107461200-107463200	Flanking Active TSS	Right Ventricle	heart
39	chr11:107461200-107463400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:107461200-107464600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:107461400-107462000	Active TSS	Brain Substantia Nigra	brain
42	chr11:107461400-107462200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
43	chr11:107461400-107462400	Flanking Active TSS	HMEC	breast
44	chr11:107461400-107462600	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:107461400-107462600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
46	chr11:107461400-107462600	Flanking Active TSS	Gastric	stomach
47	chr11:107461400-107462800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:107461400-107462800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:107461400-107462800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:107461400-107462800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin

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