Variant report

Variant	rs11826213
Chromosome Location	chr11:15217756-15217757
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15214458..15216494-chr11:15217600..15220011,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1945637	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55978909	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15201200-15218800	Weak transcription	Fetal Brain Male	brain
3	chr11:15210000-15220600	Weak transcription	Aorta	Aorta
4	chr11:15212200-15220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:15213200-15218600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:15215800-15222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15215800-15222000	Enhancers	NHDF-Ad	bronchial
8	chr11:15215800-15222000	Enhancers	Osteobl	bone
9	chr11:15216000-15218000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:15216000-15218600	Enhancers	Fetal Intestine Large	intestine
11	chr11:15216200-15218000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:15216200-15218200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:15216200-15218200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:15216200-15218600	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:15216200-15222200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:15216400-15218400	Enhancers	Stomach Mucosa	stomach
17	chr11:15216400-15218400	Enhancers	HepG2	liver
18	chr11:15216400-15219200	Enhancers	Fetal Intestine Small	intestine
19	chr11:15216600-15218400	Enhancers	Fetal Stomach	stomach
20	chr11:15216600-15219600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:15216600-15222000	Enhancers	Colon Smooth Muscle	Colon
22	chr11:15217000-15217800	Enhancers	Fetal Muscle Leg	muscle
23	chr11:15217000-15218600	Enhancers	Gastric	stomach
24	chr11:15217000-15219200	Enhancers	Pancreas	Pancrea
25	chr11:15217200-15218000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:15217200-15218000	Weak transcription	Lung	lung
27	chr11:15217200-15218000	Weak transcription	NHLF	lung
28	chr11:15217200-15218200	Enhancers	A549	lung
29	chr11:15217200-15218600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:15217200-15219000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:15217200-15219800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:15217200-15222600	Enhancers	Liver	Liver
33	chr11:15217400-15218200	Enhancers	Small Intestine	intestine
34	chr11:15217400-15218600	Enhancers	Fetal Kidney	kidney
35	chr11:15217400-15219600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:15217400-15219800	Weak transcription	NH-A	brain
37	chr11:15217400-15220800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:15217600-15219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:15217600-15219200	Weak transcription	Stomach Smooth Muscle	stomach

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