Variant report

Variant	rs11826726
Chromosome Location	chr11:59625160-59625161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:90)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:90 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:59624809-59625912	Hela-S3	cervix:	n/a	n/a
2	ARID3A	chr11:59624956-59625935	K562	blood:	n/a	n/a
3	TEAD4	chr11:59624844-59625975	K562	blood:	n/a	n/a
4	SP1	chr11:59624693-59626178	HCT-116	colon:	n/a	chr11:59626132-59626153
5	SMARCC1	chr11:59624714-59626206	Hela-S3	cervix:	n/a	n/a
6	NR2F2	chr11:59624833-59626029	K562	blood:	n/a	n/a
7	TCF7L2	chr11:59624805-59626059	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr11:59624924-59625226	Hela-S3	cervix:	n/a	n/a
9	TAL1	chr11:59625101-59625882	K562	blood:	n/a	n/a
10	GTF2F1	chr11:59624861-59625864	Hela-S3	cervix:	n/a	n/a
11	MAX	chr11:59625149-59625421	K562	blood:	n/a	n/a
12	JUN	chr11:59624958-59625242	H1-hESC	embryonic stem cell:	n/a	n/a
13	TEAD4	chr11:59624968-59625903	K562	blood:	n/a	n/a
14	MAFK	chr11:59624849-59625880	Hela-S3	cervix:	n/a	n/a
15	RCOR1	chr11:59625051-59625641	K562	blood:	n/a	n/a
16	KAP1	chr11:59625157-59625397	U2OS	brain:	n/a	n/a
17	GATA2	chr11:59624979-59625833	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr11:59625130-59625571	K562	blood:	n/a	n/a
19	RCOR1	chr11:59624713-59625918	Hela-S3	cervix:	n/a	n/a
20	TBL1XR1	chr11:59625022-59625908	K562	blood:	n/a	n/a
21	CBX3	chr11:59625084-59625826	K562	blood:	n/a	n/a
22	STAT3	chr11:59624841-59625980	Hela-S3	cervix:	n/a	n/a
23	MYC	chr11:59625085-59625842	K562	blood:	n/a	n/a
24	RCOR1	chr11:59625043-59626106	K562	blood:	n/a	n/a
25	JUN	chr11:59624828-59625908	K562	blood:	n/a	n/a
26	UBTF	chr11:59624899-59625313	K562	blood:	n/a	n/a
27	BHLHE40	chr11:59624892-59625750	K562	blood:	n/a	n/a
28	BRCA1	chr11:59624781-59625929	Hela-S3	cervix:	n/a	n/a
29	FOS	chr11:59624980-59626043	Hela-S3	cervix:	n/a	n/a
30	ATF1	chr11:59625114-59625896	K562	blood:	n/a	n/a
31	MAFK	chr11:59625021-59625451	K562	blood:	n/a	n/a
32	GATA2	chr11:59625099-59625865	K562	blood:	n/a	n/a
33	PML	chr11:59625028-59625917	K562	blood:	n/a	n/a
34	CUX1	chr11:59625065-59625994	K562	blood:	n/a	n/a
35	CEBPD	chr11:59625061-59625957	K562	blood:	n/a	n/a
36	CEBPB	chr11:59624746-59625949	Hela-S3	cervix:	n/a	n/a
37	FOS	chr11:59625038-59625801	HUVEC	blood vessel:	n/a	n/a
38	POLR2A	chr11:59625127-59625493	K562	blood:	n/a	n/a
39	FOS	chr11:59624900-59625917	MCF10A-Er-Src	breast:	n/a	n/a
40	JUND	chr11:59624738-59626061	HCT-116	colon:	n/a	chr11:59625721-59625732
41	JUND	chr11:59624791-59626103	Hela-S3	cervix:	n/a	chr11:59625721-59625732
42	FOS	chr11:59625053-59625918	MCF10A-Er-Src	breast:	n/a	n/a
43	MAZ	chr11:59624934-59625888	K562	blood:	n/a	n/a
44	MAX	chr11:59624658-59626037	HCT-116	colon:	n/a	n/a
45	RAD21	chr11:59624850-59625313	Hela-S3	cervix:	n/a	n/a
46	JUN	chr11:59625055-59625943	K562	blood:	n/a	n/a
47	SMC3	chr11:59624833-59625944	Hela-S3	cervix:	n/a	n/a
48	FOS	chr11:59624925-59625918	MCF10A-Er-Src	breast:	n/a	n/a
49	GATA1	chr11:59624932-59626000	PBDE	blood:	n/a	n/a
50	HCFC1	chr11:59624827-59625393	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59601837..59604968-chr11:59622137..59625504,3	K562	blood:
2	chr11:59609266..59612061-chr11:59622506..59625749,4	K562	blood:
3	chr11:59622515..59627357-chr11:59627457..59632233,7	K562	blood:
4	chr11:59608656..59611754-chr11:59622937..59626902,3	K562	blood:
5	chr11:59622551..59626799-chr11:59627538..59631019,5	K562	blood:
6	chr11:59557627..59559714-chr11:59622962..59625608,2	MCF-7	breast:
7	chr11:59619737..59621924-chr11:59623514..59625671,2	K562	blood:

No data

Variant related genes	Relation type
TCN1	TF binding region
ENSG00000134812	Chromatin interaction
ENSG00000134827	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56807325	1.00[ASN][1000 genomes]
rs60543015	1.00[ASN][1000 genomes]
rs61090534	1.00[ASN][1000 genomes]
rs73490907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825935	chr11:59615227-59626656	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv442233	chr11:59615391-59626011	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59623600-59626000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:59623800-59626200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:59624000-59626000	Enhancers	HMEC	breast
4	chr11:59624000-59626200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:59624000-59626400	Enhancers	NHEK	skin
6	chr11:59624200-59625400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:59624200-59625600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:59624400-59626000	Enhancers	HUVEC	blood vessel
9	chr11:59624600-59625400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:59624600-59625600	Flanking Active TSS	Hela-S3	cervix
11	chr11:59624600-59625800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:59624600-59626000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:59624800-59625200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:59624800-59625400	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr11:59624800-59625400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:59624800-59625400	Enhancers	Pancreas	Pancrea
17	chr11:59624800-59625600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:59624800-59625800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:59624800-59625800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:59624800-59625800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:59624800-59626200	Flanking Active TSS	K562	blood
22	chr11:59624800-59626800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:59624800-59627200	Enhancers	Dnd41	blood
24	chr11:59625000-59625400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:59625000-59625600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:59625000-59625600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:59625000-59625800	Enhancers	Stomach Mucosa	stomach
28	chr11:59625000-59625800	Enhancers	NH-A	brain
29	chr11:59625000-59626000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:59625000-59626000	Enhancers	A549	lung
31	chr11:59625000-59626200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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