Variant report

Variant	rs11827378
Chromosome Location	chr11:108074902-108074903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10160256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10160616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212521	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827088	1.00[AMR][1000 genomes]
rs11827907	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271846	1.00[AMR][1000 genomes]
rs12272177	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280709	1.00[AMR][1000 genomes]
rs12282185	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293027	0.91[AFR][1000 genomes]
rs3092853	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35095430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57663127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108017000-108075000	Strong transcription	Dnd41	blood
2	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
4	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
5	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:108060000-108077000	Weak transcription	NHLF	lung
7	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
8	chr11:108061800-108075000	Weak transcription	Ovary	ovary
9	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:108063400-108077200	Weak transcription	NHDF-Ad	bronchial
11	chr11:108065400-108075400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr11:108067200-108076800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:108067400-108076400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:108067400-108077000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:108067600-108076800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:108068000-108075000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:108069200-108075400	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr11:108070000-108075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:108070200-108075200	Weak transcription	Gastric	stomach
20	chr11:108070200-108076600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:108070400-108075000	Enhancers	Placenta	Placenta
22	chr11:108070400-108075400	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:108070600-108077000	Weak transcription	Aorta	Aorta
24	chr11:108070600-108077000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
26	chr11:108071000-108075000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:108071000-108077000	Weak transcription	Brain Angular Gyrus	brain
28	chr11:108071000-108077000	Weak transcription	Right Ventricle	heart
29	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
30	chr11:108071200-108075000	Weak transcription	NH-A	brain
31	chr11:108071200-108075400	Weak transcription	HSMMtube	muscle
32	chr11:108071200-108076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:108071200-108077000	Weak transcription	Brain Substantia Nigra	brain
34	chr11:108071200-108077000	Weak transcription	A549	lung
35	chr11:108071400-108075400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:108071400-108077000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:108071400-108077000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:108071400-108077000	Weak transcription	Osteobl	bone
39	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:108071600-108075000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:108071600-108077000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:108072200-108076800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:108072400-108075000	Weak transcription	HMEC	breast
44	chr11:108072800-108081800	ZNF genes & repeats	GM12878-XiMat	blood
45	chr11:108073000-108075000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:108073200-108075600	Strong transcription	NHEK	skin
47	chr11:108073400-108075400	Strong transcription	HSMM	muscle
48	chr11:108073400-108080200	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr11:108073600-108075000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:108073600-108075000	Strong transcription	Fetal Lung	lung

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