Variant report

Variant	rs11827575
Chromosome Location	chr11:8037892-8037893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:8037290-8038012	SK-N-SH	brain:	n/a	n/a
2	JUND	chr11:8037284-8037900	SK-N-SH	brain:	n/a	n/a
3	POU5F1	chr11:8037884-8038309	H1-hESC	embryonic stem cell:	n/a	n/a
4	TCF12	chr11:8037328-8038014	SK-N-SH	brain:	n/a	n/a
5	FOSL2	chr11:8037269-8038002	SK-N-SH	brain:	n/a	n/a
6	MEF2A	chr11:8037225-8037941	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr11:8037273-8037979	SK-N-SH	brain:	n/a	n/a
8	PBX3	chr11:8037240-8037990	SK-N-SH	brain:	n/a	n/a
9	MEF2A	chr11:8037314-8037990	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NLRP10-1	chr11:8037622-8038036	XLOC_009367
2	lnc-NLRP10-1	chr11:8037622-8038037	XLOC_009367
3	lnc-NLRP10-1	chr11:8037622-8038036	ENSG00000255420.1
4	lnc-NLRP10-1	chr11:8037622-8038032	NONHSAT017819

No data

Variant related genes	Relation type
TUB	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10769863	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8036800-8038800	Enhancers	HSMMtube	muscle
2	chr11:8037000-8038800	Enhancers	NHLF	lung
3	chr11:8037200-8038200	Enhancers	HMEC	breast
4	chr11:8037200-8038400	Enhancers	HSMM	muscle
5	chr11:8037200-8038600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:8037200-8038600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:8037200-8038800	Enhancers	NHDF-Ad	bronchial
8	chr11:8037200-8039000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:8037400-8038200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:8037400-8038400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
11	chr11:8037400-8038400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:8037400-8038400	Enhancers	NH-A	brain
13	chr11:8037400-8038400	Flanking Active TSS	Osteobl	bone
14	chr11:8037400-8038600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:8037400-8038800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr11:8037400-8038800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:8037400-8039000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:8037600-8038200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:8037600-8038400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
20	chr11:8037600-8038400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:8037600-8038600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:8037800-8038000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
23	chr11:8037800-8038000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr11:8037800-8038000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
25	chr11:8037800-8038000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr11:8037800-8038000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
27	chr11:8037800-8038000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:8037800-8038200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
29	chr11:8037800-8038400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:8037800-8038400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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