Variant report

Variant	rs11828416
Chromosome Location	chr11:93910895-93910896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93907084..93908799-chr11:93910378..93911922,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs72972537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972543	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72972544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972552	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972556	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72972568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8830	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv3471829	chr11:93910590-93911371	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3471818	chr11:93910623-93911341	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3471841	chr11:93910804-93911244	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93884000-93912800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:93885200-93916200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:93885400-93911200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:93886000-93913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:93886600-93913000	Weak transcription	K562	blood
6	chr11:93886800-93912800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:93887000-93911600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:93887600-93911600	Weak transcription	Spleen	Spleen
9	chr11:93889800-93911400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:93889800-93912800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:93895800-93911000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:93896200-93911600	Weak transcription	Ovary	ovary
13	chr11:93897800-93920000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:93900400-93916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:93900600-93912200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:93901200-93911600	Weak transcription	Fetal Brain Female	brain
17	chr11:93901200-93913200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:93901200-93917200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:93901400-93921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:93901800-93914000	Weak transcription	Esophagus	oesophagus
21	chr11:93902000-93911400	Weak transcription	Fetal Kidney	kidney
22	chr11:93902200-93911600	Weak transcription	Pancreas	Pancrea
23	chr11:93902200-93911800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:93902400-93911400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:93902800-93911400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:93903000-93911600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:93904200-93911200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:93904200-93911600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:93904400-93913800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:93904600-93911800	Weak transcription	GM12878-XiMat	blood
31	chr11:93904800-93911400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:93904800-93920000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:93905200-93911600	Weak transcription	Lung	lung
34	chr11:93905400-93911000	Weak transcription	HepG2	liver
35	chr11:93905400-93919600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:93905600-93911200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:93905600-93911200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:93905600-93911600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:93905600-93914000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:93905600-93914800	Weak transcription	Small Intestine	intestine
41	chr11:93905800-93911600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:93906200-93911600	Weak transcription	Fetal Thymus	thymus
43	chr11:93906800-93911600	Weak transcription	Right Ventricle	heart
44	chr11:93907200-93919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:93907400-93912800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:93907800-93911000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:93908000-93912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:93908000-93913000	Weak transcription	Fetal Brain Male	brain
49	chr11:93908200-93911200	Weak transcription	Primary T cells from cord blood	blood
50	chr11:93908600-93913000	Weak transcription	Colon Smooth Muscle	Colon

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