Variant report

Variant	rs11828502
Chromosome Location	chr11:36182635-36182636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12798334	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12805425	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12809045	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71480099	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71480100	0.82[EUR][1000 genomes]
rs7950398	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
2	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
3	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
4	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
5	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
6	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
8	chr11:36175000-36184000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:36175200-36183800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:36175600-36184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:36175600-36184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:36176600-36184000	Weak transcription	Right Ventricle	heart
13	chr11:36178000-36184000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:36178200-36183200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:36178200-36186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:36178200-36187200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:36178400-36183200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:36178400-36183800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:36178600-36182800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:36178600-36184000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:36178800-36184000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:36179000-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:36179000-36183800	Weak transcription	Adipose Nuclei	Adipose
24	chr11:36179000-36184400	Weak transcription	Brain Angular Gyrus	brain
25	chr11:36179200-36183400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:36179200-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:36179200-36183800	Weak transcription	NHLF	lung
28	chr11:36179200-36185600	Weak transcription	NHEK	skin
29	chr11:36179400-36184000	Weak transcription	Left Ventricle	heart
30	chr11:36179400-36184000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:36179400-36184000	Weak transcription	NHDF-Ad	bronchial
32	chr11:36179400-36185600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:36179400-36185800	Weak transcription	HSMM	muscle
34	chr11:36179600-36182800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:36179600-36183000	Weak transcription	Fetal Stomach	stomach
36	chr11:36179600-36184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:36179600-36184000	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:36179600-36184600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:36179600-36193000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:36179800-36183200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:36179800-36184000	Weak transcription	Brain Anterior Caudate	brain
42	chr11:36179800-36184600	Weak transcription	HUVEC	blood vessel
43	chr11:36180400-36183600	Enhancers	Brain Germinal Matrix	brain
44	chr11:36181200-36182800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr11:36181200-36183800	Enhancers	Fetal Brain Female	brain
46	chr11:36181200-36187800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:36181200-36188000	Enhancers	Fetal Lung	lung
48	chr11:36181400-36182800	Enhancers	Fetal Muscle Trunk	muscle
49	chr11:36181400-36183200	Enhancers	Fetal Heart	heart
50	chr11:36181400-36183400	Enhancers	Fetal Brain Male	brain

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