Variant report

Variant	rs11828710
Chromosome Location	chr11:75528723-75528724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:75524100-75528948	K562	blood:	n/a	chr11:75524807-75524815 chr11:75524808-75524819 chr11:75526209-75526218 chr11:75528353-75528362 chr11:75524810-75524817 chr11:75524306-75524318 chr11:75524807-75524814 chr11:75526420-75526429 chr11:75524806-75524815 chr11:75524805-75524817

No.	Distal block	Cell Line	Cell type
1	chr11:75185137..75187494-chr11:75526962..75529134,2	K562	blood:
2	chr11:75527717..75529229-chr11:75577673..75580461,2	MCF-7	breast:
3	chr11:75525852..75527769-chr11:75527858..75529905,2	K562	blood:
4	chr11:75528435..75529955-chr16:85494323..85496150,2	MCF-7	breast:
5	chr11:75525388..75527600-chr11:75527925..75530151,2	K562	blood:
6	chr11:75527688..75530896-chr11:75531829..75535250,5	K562	blood:
7	chr11:75525985..75528745-chr11:75547051..75549081,2	MCF-7	breast:
8	chr11:75528469..75531370-chr11:75554920..75558717,3	MCF-7	breast:
9	chr11:75522755..75529746-chr11:75549090..75554652,13	MCF-7	breast:
10	chr11:75521603..75525061-chr11:75527871..75530189,3	K562	blood:

Variant related genes	Relation type
ENSG00000255507	TF binding region
ENSG00000199362	Chromatin interaction
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11820629	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11821219	0.89[AFR][1000 genomes]
rs11822767	1.00[AMR][1000 genomes]
rs11823224	1.00[YRI][hapmap]
rs11823689	1.00[AMR][1000 genomes]
rs11825050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825633	1.00[AMR][1000 genomes]
rs11826966	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7109384	1.00[AMR][1000 genomes]
rs7948305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75525600-75529800	Active TSS	GM12878-XiMat	blood
2	chr11:75526800-75529000	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr11:75527200-75528800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr11:75527200-75528800	Flanking Active TSS	Primary B cells from peripheral blood	blood
5	chr11:75527400-75528800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
6	chr11:75527600-75528800	Flanking Active TSS	HUVEC	blood vessel
7	chr11:75527800-75529000	Enhancers	Pancreas	Pancrea
8	chr11:75527800-75529000	Enhancers	Small Intestine	intestine
9	chr11:75528000-75531400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:75528000-75537800	Weak transcription	Aorta	Aorta
11	chr11:75528000-75538400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:75528200-75528800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:75528200-75529000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr11:75528200-75529000	Enhancers	Fetal Thymus	thymus
15	chr11:75528200-75529200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:75528200-75529600	Weak transcription	Spleen	Spleen
17	chr11:75528200-75530400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:75528200-75531800	Weak transcription	Gastric	stomach
19	chr11:75528200-75531800	Weak transcription	Ovary	ovary
20	chr11:75528200-75541000	Weak transcription	Esophagus	oesophagus
21	chr11:75528200-75549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:75528200-75553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:75528400-75528800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:75528400-75528800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr11:75528400-75528800	Enhancers	Duodenum Mucosa	Duodenum
26	chr11:75528400-75528800	Active TSS	Stomach Smooth Muscle	stomach
27	chr11:75528400-75529200	Enhancers	Fetal Brain Male	brain
28	chr11:75528400-75529400	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:75528400-75530600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:75528400-75530600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:75528400-75530600	Enhancers	HepG2	liver
32	chr11:75528400-75530800	Enhancers	Placenta	Placenta
33	chr11:75528400-75531200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:75528400-75531400	Weak transcription	Stomach Mucosa	stomach
35	chr11:75528400-75531600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:75528400-75531800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:75528400-75531800	Weak transcription	Left Ventricle	heart
38	chr11:75528400-75533400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:75528400-75533400	Weak transcription	Fetal Stomach	stomach
40	chr11:75528400-75533800	Weak transcription	Lung	lung
41	chr11:75528400-75537400	Weak transcription	HSMMtube	muscle
42	chr11:75528400-75541600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:75528400-75543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:75528400-75550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:75528400-75561600	Weak transcription	HSMM	muscle
46	chr11:75528400-75561800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:75528600-75528800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:75528600-75528800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:75528600-75528800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr11:75528600-75528800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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