Variant report

Variant	rs11828943
Chromosome Location	chr11:25584354-25584355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:25576575..25578534-chr11:25581809..25585257,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015307	0.92[EUR][1000 genomes]
rs16914112	0.92[EUR][1000 genomes]
rs16914113	0.92[EUR][1000 genomes]
rs16914118	0.92[EUR][1000 genomes]
rs16914141	0.92[EUR][1000 genomes]
rs16914144	0.92[EUR][1000 genomes]
rs16914145	0.92[EUR][1000 genomes]
rs16914150	0.92[EUR][1000 genomes]
rs17242349	0.92[EUR][1000 genomes]
rs17308043	0.84[EUR][1000 genomes]
rs17308092	0.92[EUR][1000 genomes]
rs17308113	0.92[EUR][1000 genomes]
rs1838075	0.92[EUR][1000 genomes]
rs28498428	0.92[EUR][1000 genomes]
rs28508222	0.92[EUR][1000 genomes]
rs2896754	0.85[EUR][1000 genomes]
rs57527798	0.92[EUR][1000 genomes]
rs57955517	0.92[EUR][1000 genomes]
rs58596808	0.92[EUR][1000 genomes]
rs58933721	0.92[EUR][1000 genomes]
rs58990871	0.92[EUR][1000 genomes]
rs60873349	0.92[EUR][1000 genomes]
rs60880117	0.92[EUR][1000 genomes]
rs7120268	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933013	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049709	chr11:25150091-25605844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv467763	chr11:25172085-25600742	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv553860	chr11:25172085-25600742	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1050819	chr11:25175511-25592569	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540970	chr11:25175511-25592569	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1043467	chr11:25210613-25691086	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv540971	chr11:25210613-25691086	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv897128	chr11:25294229-25656452	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2751021	chr11:25461811-25586656	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv553869	chr11:25560116-25585107	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2757431	chr11:25564190-25638712	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759811	chr11:25564190-25842666	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv437708	chr11:25569848-25630858	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv897131	chr11:25569848-25720291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv553870	chr11:25580367-25585180	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv467765	chr11:25581337-25592935	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv553871	chr11:25581337-25592935	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv897132	chr11:25582331-25753192	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25581400-25586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:25581800-25587800	Weak transcription	NHEK	skin
3	chr11:25583600-25585000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:25584000-25584400	Enhancers	Fetal Heart	heart
5	chr11:25584200-25584600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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