Variant report

Variant	rs11829037
Chromosome Location	chr12:121151093-121151094
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121148195..121149867-chr12:121150318..121151939,2	K562	blood:
2	chr12:121146305..121152610-chr12:121160959..121168394,8	MCF-7	breast:
3	chr12:121148398..121150885-chr12:121151004..121154800,4	MCF-7	breast:
4	chr12:121145921..121147941-chr12:121149529..121151514,2	MCF-7	breast:
5	chr12:121020875..121021804-chr12:121150905..121152345,4	K562	blood:
6	chr12:121146963..121149867-chr12:121150421..121151939,2	K562	blood:
7	chr12:121133148..121135854-chr12:121150627..121153434,2	K562	blood:
8	chr12:121148319..121151196-chr12:121161623..121163655,2	K562	blood:
9	chr12:121150019..121152540-chr12:121155264..121157262,3	MCF-7	breast:
10	chr12:121122969..121126872-chr12:121145365..121151601,10	K562	blood:
11	chr12:121141631..121144439-chr12:121150820..121152579,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122971	Chromatin interaction
ENSG00000175970	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000265455	Chromatin interaction
ENSG00000256569	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10849779	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11065208	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11065211	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11065212	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11065230	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1803508	0.96[ASN][1000 genomes]
rs3830155	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559761	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55644516	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59358833	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59904018	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61229807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490302	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695950	0.93[ASN][1000 genomes]
rs7135915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7303170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7956685	0.89[EUR][1000 genomes]
rs7958698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7964228	0.91[ASN][1000 genomes]
rs7972583	0.97[ASN][1000 genomes]
rs7973907	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949443	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899557	chr12:121069201-121189116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121149000-121153600	Weak transcription	Aorta	Aorta
2	chr12:121149600-121151200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:121149600-121151200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:121149600-121151200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:121149600-121151200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:121149600-121151200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:121149600-121151200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:121149600-121151200	Weak transcription	Gastric	stomach
9	chr12:121149600-121151200	Weak transcription	Lung	lung
10	chr12:121149600-121151200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:121149600-121151400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr12:121149600-121151600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr12:121149600-121152000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr12:121149600-121152200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:121149600-121152400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr12:121149600-121152400	Weak transcription	HSMMtube	muscle
17	chr12:121149600-121154200	Weak transcription	Colonic Mucosa	Colon
18	chr12:121149600-121157200	Weak transcription	Psoas Muscle	Psoas
19	chr12:121149600-121159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:121149800-121151200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:121149800-121151200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr12:121149800-121151200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr12:121149800-121151200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr12:121149800-121151200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr12:121149800-121151200	Weak transcription	NHEK	skin
26	chr12:121149800-121151400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr12:121149800-121151400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr12:121149800-121151600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:121149800-121152600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr12:121149800-121153600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr12:121149800-121154000	Weak transcription	Primary B cells from cord blood	blood
32	chr12:121149800-121154000	Weak transcription	Stomach Mucosa	stomach
33	chr12:121149800-121157600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr12:121149800-121162800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr12:121150000-121151200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:121150000-121151200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr12:121150000-121151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:121150000-121151200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr12:121150000-121151200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr12:121150000-121151200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr12:121150000-121151200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:121150000-121151200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr12:121150000-121151200	Weak transcription	Brain Hippocampus Middle	brain
44	chr12:121150000-121151200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr12:121150000-121151200	Enhancers	Fetal Lung	lung
46	chr12:121150000-121151200	Weak transcription	Fetal Muscle Leg	muscle
47	chr12:121150000-121151200	Weak transcription	Placenta	Placenta
48	chr12:121150000-121151200	Weak transcription	Fetal Thymus	thymus
49	chr12:121150000-121151200	Weak transcription	Left Ventricle	heart
50	chr12:121150000-121151200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links