Variant report

Variant	rs11831329
Chromosome Location	chr12:20355527-20355528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10734698	0.97[ASN][1000 genomes]
rs10770619	0.95[ASN][1000 genomes]
rs11610286	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11610290	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12815060	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35148005	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4762934	0.97[ASN][1000 genomes]
rs56317263	0.99[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57311028	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74064880	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs763488	0.95[ASN][1000 genomes]
rs7979819	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035141	chr12:20286595-20429040	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv557700	chr12:20346383-20379710	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20354200-20356000	Strong transcription	Aorta	Aorta
2	chr12:20354600-20355800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links