Variant report

Variant	rs11831686
Chromosome Location	chr12:64507934-64507935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64506008..64509003-chr12:64514204..64516082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255817	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11835984	1.00[AMR][1000 genomes]
rs11837107	1.00[AMR][1000 genomes]
rs17100102	0.83[ASW][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.84[YRI][hapmap]
rs4516057	1.00[MEX][hapmap]
rs7135387	1.00[MEX][hapmap]
rs73321345	1.00[AMR][1000 genomes]
rs73321355	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321360	0.82[AFR][1000 genomes]
rs7972663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64457000-64510600	Weak transcription	HepG2	liver
2	chr12:64474800-64521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64477400-64520800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:64483000-64521400	Weak transcription	Liver	Liver
5	chr12:64483200-64520800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:64483200-64521400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:64483600-64519800	Weak transcription	Gastric	stomach
8	chr12:64483600-64521400	Weak transcription	Lung	lung
9	chr12:64487400-64526600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:64491800-64523600	Weak transcription	HUVEC	blood vessel
11	chr12:64492400-64515400	Weak transcription	Brain Anterior Caudate	brain
12	chr12:64493000-64515800	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:64493200-64509400	Weak transcription	Fetal Stomach	stomach
14	chr12:64493200-64523600	Weak transcription	Brain Angular Gyrus	brain
15	chr12:64493400-64509200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:64493600-64518800	Weak transcription	Fetal Brain Male	brain
17	chr12:64494000-64514200	Weak transcription	Hela-S3	cervix
18	chr12:64494000-64521400	Weak transcription	Psoas Muscle	Psoas
19	chr12:64494200-64521400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr12:64496400-64520800	Weak transcription	Spleen	Spleen
21	chr12:64498400-64509600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr12:64498400-64538400	Weak transcription	Small Intestine	intestine
23	chr12:64498600-64508600	Weak transcription	HSMMtube	muscle
24	chr12:64498600-64508800	Weak transcription	NHLF	lung
25	chr12:64498600-64509600	Weak transcription	Ovary	ovary
26	chr12:64498600-64521400	Weak transcription	NH-A	brain
27	chr12:64499000-64521400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr12:64499800-64514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:64502400-64510800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:64502400-64510800	Strong transcription	A549	lung
31	chr12:64502400-64511000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:64502400-64513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:64503200-64521400	Weak transcription	Brain Substantia Nigra	brain
34	chr12:64504000-64519800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:64504200-64509600	Weak transcription	Brain Germinal Matrix	brain
36	chr12:64504200-64509600	Weak transcription	Pancreas	Pancrea
37	chr12:64504200-64509600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr12:64504200-64512200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr12:64504200-64515800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr12:64504200-64520800	Weak transcription	Right Ventricle	heart
41	chr12:64504400-64509400	Weak transcription	Fetal Intestine Small	intestine
42	chr12:64504400-64510600	Weak transcription	Aorta	Aorta
43	chr12:64504400-64519800	Weak transcription	Fetal Muscle Leg	muscle
44	chr12:64505000-64508800	Strong transcription	NHDF-Ad	bronchial
45	chr12:64505000-64513000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr12:64505000-64518000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:64505200-64509000	Weak transcription	Esophagus	oesophagus
48	chr12:64505400-64508400	Strong transcription	Fetal Brain Female	brain
49	chr12:64505400-64513000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:64505600-64510400	Weak transcription	Rectal Mucosa Donor 31	rectum

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