Variant report

Variant	rs11831711
Chromosome Location	chr12:32838350-32838351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32831164..32834168-chr12:32834322..32838647,4	K562	blood:

Variant related genes	Relation type
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10771977	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10771978	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10844276	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10844277	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10844278	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10844280	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10844281	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10844283	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052137	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11052138	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11052139	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11052140	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11052143	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11052144	0.91[EUR][1000 genomes]
rs11052145	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11052146	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11052148	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11052150	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11052152	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11052190	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11052202	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11831712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303123	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12303164	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12303426	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12304039	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12310263	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12310477	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12322199	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12322258	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12368935	0.87[EUR][1000 genomes]
rs12372562	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12372569	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12578124	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12578138	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12579125	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12581955	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12810355	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12810650	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36008752	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4506737	0.81[ASN][1000 genomes]
rs4931032	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4931033	0.91[EUR][1000 genomes]
rs4931034	0.89[EUR][1000 genomes]
rs4931035	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4931036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4931649	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55945230	0.81[AMR][1000 genomes]
rs57627995	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61450261	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6488074	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6488075	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66895109	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7132486	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7135667	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7135806	0.91[EUR][1000 genomes]
rs7301868	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7301985	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7303018	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7309751	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7309894	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7310437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312580	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7316283	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7966735	0.84[EUR][1000 genomes]
rs7968325	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9971875	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32833200-32840800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:32833200-32841200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:32833200-32841800	Weak transcription	Lung	lung
4	chr12:32833200-32841800	Weak transcription	Pancreas	Pancrea
5	chr12:32833200-32841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:32833200-32842200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:32833200-32846600	Weak transcription	Psoas Muscle	Psoas
8	chr12:32833200-32848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:32833200-32848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:32833200-32864000	Weak transcription	Esophagus	oesophagus
11	chr12:32833200-32864600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:32833400-32854200	Weak transcription	Placenta	Placenta
13	chr12:32833400-32859000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:32833400-32864000	Weak transcription	Thymus	Thymus
15	chr12:32833600-32839800	Weak transcription	Aorta	Aorta
16	chr12:32833600-32840800	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:32833600-32841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:32833600-32847200	Weak transcription	HSMM	muscle
19	chr12:32833600-32854400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:32833600-32861400	Weak transcription	Right Atrium	heart
21	chr12:32833600-32861800	Weak transcription	Fetal Thymus	thymus
22	chr12:32833800-32838400	Weak transcription	Brain Germinal Matrix	brain
23	chr12:32833800-32859000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr12:32833800-32863000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr12:32834000-32848600	Weak transcription	Fetal Kidney	kidney
26	chr12:32834200-32839400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr12:32834200-32841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr12:32834200-32841600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:32834200-32842600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:32834200-32844600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr12:32834200-32844600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:32834200-32845400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr12:32834200-32847800	Weak transcription	Fetal Brain Female	brain
34	chr12:32834200-32848400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr12:32834200-32854200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr12:32834200-32864800	Weak transcription	Colon Smooth Muscle	Colon
37	chr12:32834200-32865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr12:32834200-32871400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:32834400-32839200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr12:32834400-32839800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr12:32834400-32841400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr12:32834400-32841400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr12:32834400-32841600	Weak transcription	Brain Angular Gyrus	brain
44	chr12:32834400-32841600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr12:32834400-32842600	Weak transcription	NHLF	lung
46	chr12:32834400-32843400	Weak transcription	Adipose Nuclei	Adipose
47	chr12:32834400-32845200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr12:32834400-32845400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:32834400-32845400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:32834400-32846600	Weak transcription	Primary hematopoietic stem cells	blood

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