Variant report

Variant	rs11832188
Chromosome Location	chr12:106702355-106702356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:106701532-106705274	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr12:106702031-106702379	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr12:106701919-106705271	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106639790..106642041-chr12:106701252..106704005,2	MCF-7	breast:
2	chr12:106699658..106703217-chr12:106715464..106718828,3	K562	blood:
3	chr12:106640546..106642318-chr12:106700436..106703373,2	MCF-7	breast:
4	chr12:106695771..106699164-chr12:106702286..106705903,4	MCF-7	breast:
5	chr12:106702332..106705021-chr12:106709176..106711287,2	MCF-7	breast:
6	chr12:106686272..106688271-chr12:106702208..106703818,2	MCF-7	breast:

No data

Variant related genes	Relation type
CKAP4	TF binding region
ENSG00000166046	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction

rs_ID	r²[population]
rs10778463	0.92[YRI][hapmap]
rs11832175	0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11832187	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11836922	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs41487544	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106697200-106702600	Enhancers	Fetal Heart	heart
2	chr12:106697800-106702800	Weak transcription	NHEK	skin
3	chr12:106697800-106703400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:106697800-106703600	Enhancers	Fetal Intestine Large	intestine
5	chr12:106698000-106702600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:106698000-106702600	Weak transcription	HSMM	muscle
7	chr12:106698000-106703000	Weak transcription	NHLF	lung
8	chr12:106698000-106704000	Weak transcription	GM12878-XiMat	blood
9	chr12:106698000-106705600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr12:106698000-106708400	Weak transcription	Small Intestine	intestine
11	chr12:106698000-106709000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr12:106698200-106702600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:106698200-106702600	Weak transcription	HMEC	breast
14	chr12:106698200-106702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:106698200-106702800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:106698200-106702800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:106698200-106702800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:106698200-106702800	Weak transcription	Spleen	Spleen
19	chr12:106698200-106703000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:106698200-106703200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:106698200-106703200	Weak transcription	Osteobl	bone
22	chr12:106698200-106703800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr12:106698200-106703800	Weak transcription	Fetal Stomach	stomach
24	chr12:106698200-106704200	Enhancers	Colon Smooth Muscle	Colon
25	chr12:106698200-106706000	Weak transcription	Placenta	Placenta
26	chr12:106698200-106708000	Weak transcription	Liver	Liver
27	chr12:106698400-106702400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:106698400-106703200	Weak transcription	NHDF-Ad	bronchial
29	chr12:106698400-106708000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:106698400-106709800	Weak transcription	Fetal Lung	lung
31	chr12:106698600-106702600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr12:106698600-106709600	Weak transcription	Brain Germinal Matrix	brain
33	chr12:106698800-106705400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr12:106698800-106708400	Weak transcription	Thymus	Thymus
35	chr12:106698800-106709200	Weak transcription	Fetal Thymus	thymus
36	chr12:106699000-106702400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr12:106699000-106702600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:106699000-106703800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr12:106699000-106708200	Weak transcription	Ovary	ovary
40	chr12:106699000-106708400	Weak transcription	Fetal Brain Female	brain
41	chr12:106699400-106704600	Weak transcription	Colonic Mucosa	Colon
42	chr12:106699400-106705400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:106699600-106702400	Weak transcription	Fetal Kidney	kidney
44	chr12:106699600-106702600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr12:106699600-106704600	Enhancers	Brain Angular Gyrus	brain
46	chr12:106699600-106705400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr12:106699600-106705600	Enhancers	Brain Cingulate Gyrus	brain
48	chr12:106699600-106713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:106699800-106702400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:106699800-106702800	Weak transcription	Left Ventricle	heart

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