Variant report

Variant	rs11832661
Chromosome Location	chr12:57704109-57704110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57702958..57705932-chr12:57847921..57850927,4	K562	blood:
2	chr12:57701803..57704165-chr12:57704746..57706326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139269	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11829843	0.81[AMR][1000 genomes]
rs11834319	1.00[ASW][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1463241	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs4760126	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs61747067	1.00[EUR][1000 genomes]
rs7132968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7397991	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs776037	1.00[TSI][hapmap]
rs7958942	1.00[CEU][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
7	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:57690800-57705400	Weak transcription	Spleen	Spleen
9	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
10	chr12:57693200-57705800	Weak transcription	K562	blood
11	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:57693800-57705200	Weak transcription	Small Intestine	intestine
13	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:57694000-57704600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:57694000-57705200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:57694000-57706200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:57694000-57709400	Weak transcription	Colonic Mucosa	Colon
18	chr12:57694000-57710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr12:57694400-57704800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr12:57694400-57732400	Weak transcription	Ovary	ovary
25	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
26	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr12:57696800-57715200	Weak transcription	Gastric	stomach
28	chr12:57697000-57705600	Weak transcription	Pancreas	Pancrea
29	chr12:57697000-57726000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr12:57697000-57735400	Weak transcription	Right Ventricle	heart
31	chr12:57697200-57707200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr12:57697200-57734000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:57697200-57745000	Weak transcription	Lung	lung
34	chr12:57697400-57713000	Weak transcription	Fetal Lung	lung
35	chr12:57697400-57721400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr12:57698400-57705600	Weak transcription	Esophagus	oesophagus
37	chr12:57698600-57705200	Weak transcription	GM12878-XiMat	blood
38	chr12:57699800-57762400	Weak transcription	Left Ventricle	heart
39	chr12:57700000-57704400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:57700000-57712600	Weak transcription	Fetal Muscle Leg	muscle
41	chr12:57700000-57717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr12:57700000-57719800	Weak transcription	Fetal Kidney	kidney
43	chr12:57700000-57720000	Weak transcription	Fetal Intestine Large	intestine
44	chr12:57700000-57733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr12:57700000-57736000	Weak transcription	Fetal Brain Male	brain
46	chr12:57700200-57709800	Weak transcription	Fetal Brain Female	brain
47	chr12:57700400-57721600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:57701600-57704200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr12:57701600-57704200	Enhancers	Brain Cingulate Gyrus	brain
50	chr12:57701600-57704200	Strong transcription	Thymus	Thymus

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