Variant report

Variant	rs11833399
Chromosome Location	chr12:122292685-122292686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10840631	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10840632	1.00[CHD][hapmap]
rs11043223	1.00[CHD][hapmap]
rs11043271	1.00[CHD][hapmap]
rs11043288	1.00[CHD][hapmap]
rs1154514	1.00[CHD][hapmap]
rs12299502	1.00[AMR][1000 genomes]
rs12301316	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12827036	1.00[CHD][hapmap]
rs1720033	1.00[CHD][hapmap]
rs1720037	1.00[CHD][hapmap]
rs4511320	1.00[CHD][hapmap]
rs57845241	1.00[AMR][1000 genomes]
rs59071684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7132055	1.00[CHD][hapmap]
rs73413782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899568	chr12:122254713-122456524	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122278200-122294000	Weak transcription	Spleen	Spleen
2	chr12:122278200-122296400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:122278400-122293000	Weak transcription	GM12878-XiMat	blood
4	chr12:122278400-122295400	Weak transcription	Fetal Intestine Small	intestine
5	chr12:122291200-122295400	Weak transcription	Pancreas	Pancrea
6	chr12:122292000-122296400	Weak transcription	Right Atrium	heart
7	chr12:122292200-122294000	Genic enhancers	Liver	Liver
8	chr12:122292200-122296400	Weak transcription	Colonic Mucosa	Colon
9	chr12:122292400-122292800	Strong transcription	HepG2	liver
10	chr12:122292600-122292800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:122292600-122293400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr12:122292600-122296000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:122292600-122296000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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