Variant report

Variant	rs11833575
Chromosome Location	chr12:106337830-106337831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10861534	0.83[EUR][1000 genomes]
rs12425155	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12816472	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12833614	0.82[JPT][hapmap]
rs34988533	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35160905	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35168797	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6539237	0.84[AMR][1000 genomes]
rs7299448	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7314334	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7314472	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9630290	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106328200-106339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:106334000-106339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:106334800-106338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:106335000-106338000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:106335200-106338000	Weak transcription	HMEC	breast
6	chr12:106336600-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:106336800-106338200	Weak transcription	NHEK	skin
8	chr12:106337200-106339400	Strong transcription	HSMMtube	muscle
9	chr12:106337800-106340800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:106337800-106342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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